Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   SIS06_RS15165 Genome accession   NZ_CP139188
Coordinates   2835943..2836689 (-) Length   248 a.a.
NCBI ID   WP_247470622.1    Uniprot ID   -
Organism   Bacillus subtilis strain H17-16     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2830943..2841689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS15140 (SIS06_15140) mreC 2831355..2832227 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  SIS06_RS15145 (SIS06_15145) mreB 2832258..2833271 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  SIS06_RS15150 (SIS06_15150) radC 2833363..2834058 (-) 696 WP_014480455.1 RadC family protein -
  SIS06_RS15155 (SIS06_15155) maf 2834095..2834664 (-) 570 WP_024572904.1 Maf family nucleotide pyrophosphatase -
  SIS06_RS15160 (SIS06_15160) spoIIB 2834817..2835809 (-) 993 WP_144500661.1 stage II sporulation protein SpoIIB -
  SIS06_RS15165 (SIS06_15165) comC 2835943..2836689 (-) 747 WP_247470622.1 prepilin peptidase Machinery gene
  SIS06_RS15170 (SIS06_15170) folC 2836830..2838122 (-) 1293 WP_041339279.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  SIS06_RS15175 (SIS06_15175) valS 2838182..2840824 (-) 2643 WP_283934480.1 valine--tRNA ligase -
  SIS06_RS15180 (SIS06_15180) - 2841272..2841463 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26437.01 Da        Isoelectric Point: 9.7944

>NTDB_id=907649 SIS06_RS15165 WP_247470622.1 2835943..2836689(-) (comC) [Bacillus subtilis strain H17-16]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPALVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=907649 SIS06_RS15165 WP_247470622.1 2835943..2836689(-) (comC) [Bacillus subtilis strain H17-16]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATAATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTCTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(100-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992