Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   SIS06_RS13310 Genome accession   NZ_CP139188
Coordinates   2521982..2522785 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain H17-16     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2516982..2527785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS13285 (SIS06_13285) glpQB 2518122..2518853 (-) 732 WP_169037826.1 glycerophosphodiester phosphodiesterase -
  SIS06_RS13290 (SIS06_13290) yqiI 2518932..2519552 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase family protein -
  SIS06_RS13295 (SIS06_13295) - 2519572..2519868 (-) 297 WP_169037825.1 hypothetical protein -
  SIS06_RS13300 (SIS06_13300) - 2520176..2520328 (+) 153 WP_014480226.1 hypothetical protein -
  SIS06_RS13305 (SIS06_13305) yqiG 2520401..2521519 (+) 1119 WP_131227606.1 NADH-dependent flavin oxidoreductase -
  SIS06_RS13310 (SIS06_13310) spo0A 2521982..2522785 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  SIS06_RS13315 (SIS06_13315) spoIVB 2523061..2524341 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  SIS06_RS13320 (SIS06_13320) recN 2524516..2526246 (-) 1731 WP_038829742.1 DNA repair protein RecN Machinery gene
  SIS06_RS13325 (SIS06_13325) argR 2526283..2526732 (-) 450 WP_029317927.1 arginine repressor ArgR -
  SIS06_RS13330 (SIS06_13330) yqxC 2526830..2527675 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=907630 SIS06_RS13310 WP_003226427.1 2521982..2522785(-) (spo0A) [Bacillus subtilis strain H17-16]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=907630 SIS06_RS13310 WP_003226427.1 2521982..2522785(-) (spo0A) [Bacillus subtilis strain H17-16]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCAGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1