Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   SIS06_RS12330 Genome accession   NZ_CP139188
Coordinates   2346134..2346754 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain H17-16     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2341134..2351754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS12290 (SIS06_12290) ptsA 2342265..2342771 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  SIS06_RS12295 (SIS06_12295) ypqA 2342909..2343328 (+) 420 WP_015251833.1 Hsp20/alpha crystallin family protein -
  SIS06_RS12300 (SIS06_12300) sppG 2343349..2343726 (-) 378 WP_014477159.1 YppG family protein -
  SIS06_RS12305 (SIS06_12305) yppF 2343914..2344102 (+) 189 WP_003230690.1 YppF family protein -
  SIS06_RS12310 (SIS06_12310) yppE 2344141..2344512 (-) 372 WP_003246080.1 YppE family protein -
  SIS06_RS12315 (SIS06_12315) yppD 2344558..2344803 (-) 246 WP_038828603.1 YppD family protein -
  SIS06_RS12320 (SIS06_12320) sspM 2345002..2345106 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  SIS06_RS12325 (SIS06_12325) yppC 2345131..2346093 (-) 963 WP_064671082.1 DUF2515 domain-containing protein -
  SIS06_RS12330 (SIS06_12330) recU 2346134..2346754 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  SIS06_RS12335 (SIS06_12335) ponA 2346776..2349520 (+) 2745 WP_077671381.1 PBP1A family penicillin-binding protein -
  SIS06_RS12340 (SIS06_12340) ypoC 2349596..2350090 (-) 495 WP_283933520.1 YpoC family protein -
  SIS06_RS12345 (SIS06_12345) nth 2350087..2350746 (-) 660 WP_009967580.1 endonuclease III -
  SIS06_RS12350 (SIS06_12350) dnaD 2350765..2351463 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=907629 SIS06_RS12330 WP_004399067.1 2346134..2346754(+) (recU) [Bacillus subtilis strain H17-16]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=907629 SIS06_RS12330 WP_004399067.1 2346134..2346754(+) (recU) [Bacillus subtilis strain H17-16]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1