Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABMY55_RS10400 Genome accession   NZ_CP158143
Coordinates   2166503..2166979 (-) Length   158 a.a.
NCBI ID   WP_001186710.1    Uniprot ID   -
Organism   Escherichia coli strain FDN-11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2161503..2171979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABMY55_RS10365 (ABMY55_10365) - 2162447..2163580 (+) 1134 Protein_2013 Accessory colonization factor AcfD -
  ABMY55_RS10370 (ABMY55_10370) - 2163864..2164433 (-) 570 WP_001290247.1 DUF4942 domain-containing protein -
  ABMY55_RS10375 (ABMY55_10375) - 2164530..2164727 (-) 198 WP_000839281.1 DUF957 domain-containing protein -
  ABMY55_RS10380 (ABMY55_10380) - 2164739..2165227 (-) 489 WP_000777541.1 DUF5983 family protein -
  ABMY55_RS10385 (ABMY55_10385) - 2165224..2165598 (-) 375 WP_000854753.1 TA system toxin CbtA family protein -
  ABMY55_RS10390 (ABMY55_10390) cbeA 2165688..2166056 (-) 369 WP_001278232.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  ABMY55_RS10395 (ABMY55_10395) - 2166219..2166440 (-) 222 WP_000692303.1 DUF987 domain-containing protein -
  ABMY55_RS10400 (ABMY55_10400) radC 2166503..2166979 (-) 477 WP_001186710.1 RadC family protein Machinery gene
  ABMY55_RS10405 (ABMY55_10405) - 2166991..2167470 (-) 480 WP_000860065.1 antirestriction protein -
  ABMY55_RS10410 (ABMY55_10410) - 2167552..2168370 (-) 819 WP_001234631.1 DUF932 domain-containing protein -
  ABMY55_RS10415 (ABMY55_10415) - 2168469..2168702 (-) 234 WP_001278287.1 DUF905 family protein -
  ABMY55_RS10420 (ABMY55_10420) - 2168708..2169385 (-) 678 WP_001097305.1 hypothetical protein -
  ABMY55_RS10425 (ABMY55_10425) - 2169533..2170213 (-) 681 WP_001593697.1 YafY family protein -
  ABMY55_RS10430 (ABMY55_10430) - 2170416..2171300 (-) 885 WP_001116802.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17630.26 Da        Isoelectric Point: 7.6151

>NTDB_id=907626 ABMY55_RS10400 WP_001186710.1 2166503..2166979(-) (radC) [Escherichia coli strain FDN-11]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=907626 ABMY55_RS10400 WP_001186710.1 2166503..2166979(-) (radC) [Escherichia coli strain FDN-11]
ATGCAACAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGCCTTATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTACTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392