Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   SIS06_RS08230 Genome accession   NZ_CP139188
Coordinates   1535768..1536046 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain H17-16     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1530768..1541046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS08210 (SIS06_08210) panEB 1531956..1532867 (+) 912 WP_283934327.1 ketopantoate reductase family protein -
  SIS06_RS08215 (SIS06_08215) ampS 1532901..1534133 (-) 1233 WP_003232341.1 aminopeptidase -
  SIS06_RS08220 (SIS06_08220) ykpC 1534242..1534376 (-) 135 WP_003238865.1 protein YkpC -
  SIS06_RS08225 (SIS06_08225) mreBH 1534477..1535484 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  SIS06_RS08230 (SIS06_08230) abrB 1535768..1536046 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  SIS06_RS08235 (SIS06_08235) kinC 1536236..1537522 (+) 1287 WP_021479369.1 two-component sensor histidine kinase KinC -
  SIS06_RS08240 (SIS06_08240) ykqA 1537538..1538365 (+) 828 WP_041850869.1 gamma-glutamylcyclotransferase -
  SIS06_RS08245 (SIS06_08245) ktrC 1538428..1539093 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  SIS06_RS08250 (SIS06_08250) ade 1539249..1540982 (+) 1734 WP_283934328.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=907624 SIS06_RS08230 WP_003244728.1 1535768..1536046(+) (abrB) [Bacillus subtilis strain H17-16]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=907624 SIS06_RS08230 WP_003244728.1 1535768..1536046(+) (abrB) [Bacillus subtilis strain H17-16]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576