Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   SIS06_RS08010 Genome accession   NZ_CP139188
Coordinates   1495836..1496300 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain H17-16     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1490836..1501300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS07990 (SIS06_07990) kinA 1491303..1493123 (+) 1821 WP_015252197.1 sporulation histidine kinase KinA -
  SIS06_RS07995 (SIS06_07995) dapX 1493133..1494314 (-) 1182 WP_283934316.1 aminotransferase A -
  SIS06_RS08000 (SIS06_08000) - 1494516..1494677 (-) 162 WP_014476654.1 hypothetical protein -
  SIS06_RS08005 (SIS06_08005) cheV 1494881..1495792 (+) 912 WP_320535512.1 chemotaxis protein CheV -
  SIS06_RS08010 (SIS06_08010) kre 1495836..1496300 (-) 465 WP_003232406.1 YkyB family protein Regulator
  SIS06_RS08015 (SIS06_08015) ykuC 1496426..1497718 (-) 1293 WP_014479656.1 MFS transporter -
  SIS06_RS08020 (SIS06_08020) ltdD 1497794..1498288 (-) 495 WP_283934464.1 L,D-transpeptidase family protein -
  SIS06_RS08025 (SIS06_08025) ppeE 1498345..1499205 (-) 861 WP_003232400.1 metallophosphoesterase -
  SIS06_RS08030 (SIS06_08030) fadH 1499348..1500112 (+) 765 WP_015383534.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=907622 SIS06_RS08010 WP_003232406.1 1495836..1496300(-) (kre) [Bacillus subtilis strain H17-16]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=907622 SIS06_RS08010 WP_003232406.1 1495836..1496300(-) (kre) [Bacillus subtilis strain H17-16]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1