Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   SIS06_RS05975 Genome accession   NZ_CP139188
Coordinates   1124006..1124584 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain H17-16     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1119006..1129584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS22140 - 1119517..1120032 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  SIS06_RS22145 - 1120273..1120899 (-) 627 Protein_1109 protoglobin domain-containing protein -
  SIS06_RS05960 (SIS06_05960) comW 1120954..1122483 (-) 1530 WP_283934211.1 FAD-dependent oxidoreductase -
  SIS06_RS05965 (SIS06_05965) yhxC 1122595..1123452 (+) 858 WP_283934212.1 SDR family oxidoreductase -
  SIS06_RS05970 (SIS06_05970) yhzC 1123480..1123713 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  SIS06_RS05975 (SIS06_05975) comK 1124006..1124584 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  SIS06_RS05980 (SIS06_05980) yhxD 1124631..1125530 (-) 900 WP_041851019.1 SDR family oxidoreductase -
  SIS06_RS05985 (SIS06_05985) yhjA 1125747..1126016 (+) 270 WP_003224373.1 excalibur calcium-binding domain-containing protein -
  SIS06_RS05990 (SIS06_05990) yhjB 1126060..1127529 (-) 1470 WP_120027952.1 sodium:solute symporter family protein -
  SIS06_RS05995 (SIS06_05995) yhjC 1127526..1127726 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  SIS06_RS06000 (SIS06_06000) - 1127925..1128296 (-) 372 WP_014476361.1 hypothetical protein -
  SIS06_RS06005 (SIS06_06005) yhjE 1128448..1129071 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  SIS06_RS06010 (SIS06_06010) lepB 1129073..1129579 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=907610 SIS06_RS05975 WP_029317573.1 1124006..1124584(+) (comK) [Bacillus subtilis strain H17-16]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=907610 SIS06_RS05975 WP_029317573.1 1124006..1124584(+) (comK) [Bacillus subtilis strain H17-16]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGATGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995