Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   TM2_RS06810 Genome accession   NZ_AP025262
Coordinates   1342777..1343238 (-) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus altitudinis strain TM2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1337777..1348238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TM2_RS06785 (TM2_12850) - 1338330..1339214 (+) 885 WP_017359428.1 cation diffusion facilitator family transporter -
  TM2_RS06790 (TM2_12860) - 1339279..1339431 (-) 153 WP_017367142.1 hypothetical protein -
  TM2_RS06795 (TM2_12870) - 1339732..1340271 (+) 540 WP_007498690.1 RDD family protein -
  TM2_RS06800 (TM2_12880) - 1340396..1341706 (+) 1311 WP_046343416.1 MFS transporter -
  TM2_RS06805 (TM2_12890) - 1341780..1342688 (+) 909 WP_008348035.1 chemotaxis protein -
  TM2_RS06810 (TM2_12900) kre 1342777..1343238 (-) 462 WP_008356877.1 YkyB family protein Regulator
  TM2_RS06815 (TM2_12910) - 1343458..1344354 (-) 897 WP_236810420.1 AraC family transcriptional regulator -
  TM2_RS06820 (TM2_12920) - 1344468..1345412 (+) 945 WP_236810421.1 DMT family transporter -
  TM2_RS06825 (TM2_12930) - 1345569..1345784 (-) 216 WP_008348016.1 hypothetical protein -
  TM2_RS06830 (TM2_12940) - 1345950..1346126 (+) 177 WP_236810422.1 hypothetical protein -
  TM2_RS06835 (TM2_12950) - 1346355..1347632 (-) 1278 WP_048001612.1 MFS transporter -
  TM2_RS06840 (TM2_12960) - 1347706..1348203 (-) 498 WP_236810423.1 L,D-transpeptidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=90756 TM2_RS06810 WP_008356877.1 1342777..1343238(-) (kre) [Bacillus altitudinis strain TM2]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=90756 TM2_RS06810 WP_008356877.1 1342777..1343238(-) (kre) [Bacillus altitudinis strain TM2]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCATCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAATCGAGCGAAACAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTATACAAAACCCGTCTTCAAACGGCTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765

Multiple sequence alignment