Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R0L47_RS21725 Genome accession   NZ_CP139173
Coordinates   4661988..4663370 (-) Length   460 a.a.
NCBI ID   WP_005971086.1    Uniprot ID   A0A1V2R930
Organism   Pectobacterium polonicum strain LMG 31077     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4656988..4668370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0L47_RS21695 (R0L47_21605) pepP 4657237..4658562 (-) 1326 WP_137741477.1 Xaa-Pro aminopeptidase -
  R0L47_RS21700 (R0L47_21610) - 4658624..4659211 (-) 588 WP_137741478.1 YecA family protein -
  R0L47_RS21705 (R0L47_21615) zapA 4659404..4659733 (+) 330 WP_005971092.1 cell division protein ZapA -
  R0L47_RS21715 (R0L47_21625) - 4660032..4660673 (+) 642 WP_137741479.1 5-formyltetrahydrofolate cyclo-ligase -
  R0L47_RS21720 (R0L47_21630) nadR 4660670..4661923 (-) 1254 WP_137741480.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  R0L47_RS21725 (R0L47_21635) radA 4661988..4663370 (-) 1383 WP_005971086.1 DNA repair protein RadA Machinery gene
  R0L47_RS21730 (R0L47_21640) serB 4663388..4664365 (-) 978 WP_137741481.1 phosphoserine phosphatase -
  R0L47_RS21735 (R0L47_21645) - 4664522..4665202 (+) 681 WP_137741482.1 YtjB family periplasmic protein -
  R0L47_RS21740 (R0L47_21650) - 4665252..4666181 (-) 930 WP_137741483.1 hypothetical protein -
  R0L47_RS21745 (R0L47_21655) prfC 4666473..4668062 (+) 1590 WP_107170832.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49576.13 Da        Isoelectric Point: 7.4218

>NTDB_id=907540 R0L47_RS21725 WP_005971086.1 4661988..4663370(-) (radA) [Pectobacterium polonicum strain LMG 31077]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=907540 R0L47_RS21725 WP_005971086.1 4661988..4663370(-) (radA) [Pectobacterium polonicum strain LMG 31077]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCGGATTACCCGCGCTGGCAAGGGCAGTGCAGCGC
CTGCCACGCCTGGAATACCATTACTGAAGTTCGCCTGGCGTCGGCATCCGTATCACGCTCCGACCGCCTCACCGGCTATG
CGGGTGAGAGTGCTGGCGTCAGCCGGGTGCAAAAGCTCTCAGAAATCAGCCTTGAAGCGTTGCCCCGCTTTTCCACTGGC
TTTCAGGAATTTGATCGCGTTCTGGGCGGCGGCGTCGTTCCGGGCAGCGCGATCCTGATCGGCGGCAACCCCGGCGCGGG
CAAAAGTACCCTGCTGCTGCAAACGCTGTGCAAGCTGTCAGAAAATATGAAGACCCTGTACGTCACCGGTGAAGAATCAC
TACAACAGGTGGCAATGCGGGCACATCGCCTCAATCTGCCGACGCAGAATCTCAACATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAATTGATGGTGATCGACTCCATTCAGGTCATGCATCTTGCCGATAT
TCAATCATCCCCCGGAAGTGTCGCACAGGTGCGTGAAACCGCCGCCTACCTGACGCGCTTCGCCAAAACGCGCGGCGTGG
CTATCGTAATGGTCGGCCACGTCACCAAAGACGGTTCACTCGCCGGGCCGAAAGTCTTGGAACACTGCATCGACTGCTCC
GTGCTGCTGGACGGCGATGCCGATTCGCGCTTCCGCACGCTACGCAGCCATAAAAACCGTTTCGGTGCCGTCAATGAGTT
AGGCGTGTTCGCCATGACGGAACAAGGACTGCGTGAGATCAGCAACCCGTCAGCCATTTTCCTCAGTCGCGGAGATGAAG
TGACGTCCGGCAGTTCGGTCATGGTGGTGTGGGAAGGCACGCGCCCGCTGCTGGTTGAGATTCAGGCGCTGGTCGATCAA
TCGATGATGGCTAATCCGCGTCGCGTCGCCGTGGGGCTGGAGCAAAACCGCCTGGCGATTCTGCTGGCAGTACTGCATCG
CCACGGCGGCTTGCAGATGTCGGATCAGGATGTATTCGTGAATGTCGTCGGCGGCGTCAAAGTCACCGAAACCAGCGCCG
ATCTGGCATTGCTGCTCTCGCTGGTTTCCAGCTTCCGTGACCGCCCGCTGCCGCAGGATCTGGTCATCTTCGGTGAAGTC
GGTCTGGCGGGCGAAATTCGTCCAGTTCCCAGCGGACAAGAGCGGATTACCGAAGCCGCCAAACACGGTTTTAAACGTGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCAGCCAGCATGCAGGTGTTCGGCGTGAAAAAGCTGGCCGACGCCC
TGGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V2R930

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus mitis NCTC 12261

42.982

99.13

0.426
  radA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  radA Streptococcus pneumoniae D39

42.982

99.13

0.426
  radA Streptococcus pneumoniae R6

42.982

99.13

0.426
  radA Streptococcus pneumoniae TIGR4

42.982

99.13

0.426
  radA Streptococcus mitis SK321

42.982

99.13

0.426