Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SIM97_RS05155 Genome accession   NZ_CP139172
Coordinates   1130372..1131754 (-) Length   460 a.a.
NCBI ID   WP_129702692.1    Uniprot ID   -
Organism   Pectobacterium zantedeschiae strain CFBP 1357     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1125372..1136754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIM97_RS05120 (SIM97_05120) - 1125499..1126086 (-) 588 WP_129702687.1 YecA family protein -
  SIM97_RS05125 (SIM97_05125) zapA 1126279..1126608 (+) 330 WP_039304500.1 cell division protein ZapA -
  SIM97_RS05135 (SIM97_05135) - 1126905..1127546 (+) 642 WP_129702688.1 5-formyltetrahydrofolate cyclo-ligase -
  SIM97_RS05140 (SIM97_05140) nadR 1127543..1128796 (-) 1254 WP_129702689.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  SIM97_RS05145 (SIM97_05145) - 1128880..1129806 (-) 927 WP_129702690.1 LysR substrate-binding domain-containing protein -
  SIM97_RS05150 (SIM97_05150) - 1129925..1130320 (+) 396 WP_129702691.1 VOC family protein -
  SIM97_RS05155 (SIM97_05155) radA 1130372..1131754 (-) 1383 WP_129702692.1 DNA repair protein RadA Machinery gene
  SIM97_RS05160 (SIM97_05160) serB 1131772..1132749 (-) 978 WP_129702693.1 phosphoserine phosphatase -
  SIM97_RS05165 (SIM97_05165) - 1132908..1133600 (+) 693 WP_129702694.1 YtjB family periplasmic protein -
  SIM97_RS05170 (SIM97_05170) - 1133651..1134574 (-) 924 WP_129702695.1 hypothetical protein -
  SIM97_RS05175 (SIM97_05175) prfC 1134864..1136453 (+) 1590 WP_129702696.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49590.16 Da        Isoelectric Point: 7.4218

>NTDB_id=907501 SIM97_RS05155 WP_129702692.1 1130372..1131754(-) (radA) [Pectobacterium zantedeschiae strain CFBP 1357]
MAKAIKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=907501 SIM97_RS05155 WP_129702692.1 1130372..1131754(-) (radA) [Pectobacterium zantedeschiae strain CFBP 1357]
GTGGCAAAAGCCATCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGATTACCCGCGCTGGCAAGGGCAGTGCAGCGC
CTGCCATGCCTGGAATACCATTACTGAAGTTCGCCTGGCGTCTGCATCCGTATCACGCTCCGACCGTCTCACTGGCTATG
CCGGTGAGAGTGCTGGCGTCAGCCGGGTACAAAAGCTCTCGGAAATCAGCCTTGAAGCGTTACCTCGCTTTTCCACTGGC
TTTCAGGAGTTTGATCGCGTTCTGGGTGGTGGTGTCGTTCCAGGTAGCGCAATTCTGATCGGGGGTAATCCCGGCGCGGG
TAAGAGTACGCTGCTGCTGCAAACGCTCTGCAAGCTGTCAGAAAATATGAAAACCCTGTACGTCACTGGCGAAGAATCCT
TGCAGCAGGTGGCGATGCGGGCACACCGTCTCAACCTACCGACTCAAAATCTCAACATGCTGTCAGAAACCAGCATTGAG
CAGATTTGCCTGATTGCCGAGCAAGAACAGCCGAAGTTGATGGTGATCGATTCCATTCAGGTGATGCACCTCGCCGACAT
TCAATCTTCTCCCGGCAGCGTGGCGCAAGTACGTGAAACCGCCGCCTACCTGACGCGCTTCGCTAAAACGCGCGGCGTTG
CTATCGTCATGGTCGGCCACGTCACCAAAGACGGCTCGCTCGCCGGGCCGAAAGTATTGGAACACTGCATTGACTGCTCC
GTGCTGTTGGACGGTGATGCCGATTCGCGCTTCCGCACGCTGCGTAGCCATAAGAACCGTTTCGGTGCCGTTAACGAACT
GGGTGTATTTGCCATGACGGAGCAGGGTCTGCGTGAGATCAGCAACCCGTCAGCCATTTTCCTCAGCCGTGGGGACGAAG
TGACATCTGGCAGTTCAGTCATGGTGGTGTGGGAAGGTACACGTCCGCTGCTGGTCGAGATTCAGGCGCTGGTAGATCAA
TCTATGATGGCCAATCCGCGTCGCGTCGCGGTCGGGCTGGAACAAAACCGATTGGCGATCCTGCTGGCGGTGTTGCATCG
CCACGGCGGCTTGCAAATGTCGGATCAGGATGTGTTTGTGAATGTCGTCGGCGGCGTCAAAGTCACCGAAACCAGCGCCG
ACCTGGCGCTGCTGCTATCGCTGGTTTCCAGCTTCCGCGATCGCCCACTACCGCAGGATCTGGTCATCTTCGGTGAAGTC
GGTCTGGCAGGCGAAATTCGTCCGGTTCCCAGCGGCCAGGAGCGGATTACTGAGGCCGCCAAGCACGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCGGCCAGCATGCAGGTTTTCGGTGTGAAAAAGCTGGCCGATGCTT
TGGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus mitis NCTC 12261

42.982

99.13

0.426
  radA Streptococcus mitis SK321

42.982

99.13

0.426
  radA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  radA Streptococcus pneumoniae D39

42.982

99.13

0.426
  radA Streptococcus pneumoniae R6

42.982

99.13

0.426
  radA Streptococcus pneumoniae TIGR4

42.982

99.13

0.426