Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SJQ66_RS23690 Genome accession   NZ_CP139170
Coordinates   2336964..2338349 (-) Length   461 a.a.
NCBI ID   WP_046153387.1    Uniprot ID   A0A0F5JXR2
Organism   Robbsia andropogonis strain BLB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2331964..2343349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJQ66_RS23675 - 2332408..2332929 (-) 522 WP_320534615.1 glutathione peroxidase -
  SJQ66_RS23680 - 2333104..2335254 (+) 2151 WP_320534616.1 ATP-binding cassette domain-containing protein -
  SJQ66_RS23685 - 2335331..2336938 (+) 1608 WP_024903111.1 peptide chain release factor 3 -
  SJQ66_RS23690 radA 2336964..2338349 (-) 1386 WP_046153387.1 DNA repair protein RadA Machinery gene
  SJQ66_RS23695 lplT 2338673..2339995 (+) 1323 WP_024903113.1 lysophospholipid transporter LplT -
  SJQ66_RS23700 thiD 2340030..2340797 (+) 768 Protein_1992 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SJQ66_RS23705 - 2341026..2342378 (-) 1353 WP_081764881.1 DUF1853 family protein -
  SJQ66_RS29795 - 2342362..2342979 (-) 618 Protein_1994 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 49048.43 Da        Isoelectric Point: 7.2041

>NTDB_id=907481 SJQ66_RS23690 WP_046153387.1 2336964..2338349(-) (radA) [Robbsia andropogonis strain BLB1]
MAKIKTTYSCTACGNQSPKWSGQCPGCGAWNTLVEGVAETPSAHRFQALTKSSPVRSLHEIESADVPRYATGIGEFDRVL
GGGLVSGGVVLIGGDPGIGKSTLLLQALASLGEARKVLYVSGEESDAQIALRAERLGLLEDGRTEKGAGALRLFAEIQLE
KIQLAIDAERPAVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRLAKQTGVTIIMVGHVTKEGALAGPRVLEHIVDTV
LYFEGDTHSSFRLIRAIKNRFGAVNELGVFAMTERGLRGVSNPSALFLSQHEHTVPGSCVLVTQEGTRPLLVEIQALVDS
SHVPNPRRLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKISEPAVDLAVLLAIHSSMRNKPLPKGLVTFGEV
GLAGEIRPSPRGQDRLKEAAKLGFTQAIVPKANVPKQPIEGLTVIAVERIEQAIDRARELE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=907481 SJQ66_RS23690 WP_046153387.1 2336964..2338349(-) (radA) [Robbsia andropogonis strain BLB1]
TTGGCCAAGATCAAGACTACCTATAGCTGTACCGCGTGCGGCAACCAATCACCGAAGTGGAGCGGCCAGTGCCCGGGTTG
CGGCGCGTGGAACACGCTGGTCGAAGGCGTGGCTGAAACGCCATCCGCGCACCGTTTCCAGGCGCTGACCAAGTCGTCGC
CGGTACGGTCGCTGCATGAAATCGAATCAGCCGATGTGCCACGCTATGCCACGGGAATCGGTGAATTCGACCGCGTGCTG
GGTGGCGGGCTGGTCAGCGGCGGCGTGGTGCTGATCGGCGGTGATCCGGGTATCGGCAAGTCCACCCTCTTGCTGCAGGC
GCTCGCGTCGCTTGGCGAGGCGCGCAAGGTGCTCTATGTCAGCGGCGAGGAATCCGATGCGCAGATCGCCCTTCGGGCGG
AGCGGCTCGGGCTGCTGGAAGACGGCCGCACGGAGAAAGGCGCGGGCGCGTTGCGGTTGTTCGCGGAAATCCAGCTCGAA
AAAATCCAGCTGGCGATCGATGCGGAACGACCGGCCGTCGCGGTGATCGACTCGATTCAGACCGTCTATTCGGAGGCATT
GACCTCGGCGCCCGGCTCGGTCGCGCAGGTGCGCGAGTGTGCCGCGCAGTTGACGCGGCTGGCAAAACAGACCGGCGTGA
CCATCATCATGGTCGGCCATGTGACCAAAGAGGGCGCGCTGGCGGGGCCGCGTGTACTCGAACATATCGTTGATACCGTA
CTATATTTCGAGGGCGATACACACTCGTCGTTCCGGCTGATCCGGGCGATCAAGAACCGCTTTGGCGCCGTCAACGAGCT
GGGCGTCTTTGCCATGACGGAGCGGGGGCTGCGGGGTGTCTCGAATCCGTCGGCGTTGTTTCTGTCTCAGCACGAGCATA
CGGTGCCCGGCTCCTGCGTCCTTGTGACGCAGGAAGGCACGCGACCGTTGCTAGTCGAGATTCAGGCGCTGGTCGACAGT
TCGCATGTGCCTAATCCGCGGCGCCTGACGGTAGGGCTGGAGCAGAACCGGCTGGCGATGTTGCTGGCGGTGTTGAATCG
GCATGCGGGCATTGCCTGCTTCGATCAGGACGTGTTCCTGAACGCGGTAGGGGGGGTGAAGATCAGCGAGCCGGCAGTCG
ACCTGGCGGTCCTGCTTGCGATCCATTCGTCCATGCGGAACAAGCCGCTGCCGAAGGGGCTCGTGACATTTGGGGAAGTT
GGCCTGGCCGGTGAGATCCGGCCGTCGCCGCGCGGGCAGGATCGACTGAAAGAAGCGGCGAAGCTGGGGTTCACGCAGGC
GATCGTGCCAAAGGCCAATGTGCCAAAGCAGCCAATCGAGGGCTTGACGGTCATTGCCGTCGAGCGCATCGAACAGGCGA
TCGACCGTGCGCGTGAGTTGGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(75-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5JXR2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.431

100

0.508
  radA Streptococcus mitis SK321

48.261

99.783

0.482
  radA Streptococcus pneumoniae Rx1

47.948

100

0.482
  radA Streptococcus pneumoniae TIGR4

47.948

100

0.482
  radA Streptococcus pneumoniae D39

47.948

100

0.482
  radA Streptococcus pneumoniae R6

47.948

100

0.482
  radA Streptococcus mitis NCTC 12261

48.148

99.566

0.479