Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   SJQ66_RS17845 Genome accession   NZ_CP139170
Coordinates   985411..986970 (-) Length   519 a.a.
NCBI ID   WP_407691545.1    Uniprot ID   -
Organism   Robbsia andropogonis strain BLB1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 980411..991970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJQ66_RS17820 - 981223..981864 (-) 642 WP_024902519.1 LON peptidase substrate-binding domain-containing protein -
  SJQ66_RS17825 rapZ 981861..982823 (-) 963 WP_024902520.1 RNase adapter RapZ -
  SJQ66_RS17830 hprK 983024..983992 (-) 969 WP_024902521.1 HPr(Ser) kinase/phosphatase -
  SJQ66_RS17835 ptsN 984026..984481 (-) 456 WP_024902522.1 PTS IIA-like nitrogen regulatory protein PtsN -
  SJQ66_RS17840 hpf 984886..985251 (-) 366 WP_024902524.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SJQ66_RS17845 rpoN/rpoN1 985411..986970 (-) 1560 WP_407691545.1 RNA polymerase factor sigma-54 Machinery gene
  SJQ66_RS17850 lptB 987130..987951 (-) 822 WP_024902526.1 LPS export ABC transporter ATP-binding protein -
  SJQ66_RS17855 lptA 987948..988685 (-) 738 WP_024902527.1 lipopolysaccharide transport periplasmic protein LptA -
  SJQ66_RS17860 lptC 988709..989266 (-) 558 WP_046151999.1 LPS export ABC transporter periplasmic protein LptC -
  SJQ66_RS17865 - 989388..989876 (-) 489 WP_046151998.1 HAD family hydrolase -
  SJQ66_RS17870 - 989972..990955 (-) 984 WP_024902529.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 56470.10 Da        Isoelectric Point: 4.7166

>NTDB_id=907476 SJQ66_RS17845 WP_407691545.1 985411..986970(-) (rpoN/rpoN1) [Robbsia andropogonis strain BLB1]
MVGDIMKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVATAVAQNPLLESDDDWGGKSLRVASDGSLASSAGTAAS
NDGARGADRRDGDGAVDGGAGADARGDGGNDGERRDEPARDSSDDGPTWSLDDYARGPSGGNSAGNDDDDLPPMQLEEVP
TNLRDYLNGQLALTRTDARDRALVTFLIESIDDAGYLTTTLDEIIDELSEDSGVDLDDLTNALTLLQSFDPPGVGARSPS
ECLALQLRRHEPSATRTLAIEIVNHHLELLAARDFTRLRRQLKVDDDALREAHQLIRSLEPFPGAAYSSAEADYVVPDVL
VRKTGQGWIAELNPEVVPKLRINNLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFAH
GEIAMRPLVLREIADTLGLHESTVSRVTTGKYMLTPSGTLEFKFFFGSHISTDTGGSASSTAIRALIKQLIGAEDPKSPL
SDSRIAELLAEQGFVVARRTVAKYREALRIPAVNLRKSL

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=907476 SJQ66_RS17845 WP_407691545.1 985411..986970(-) (rpoN/rpoN1) [Robbsia andropogonis strain BLB1]
ATGGTTGGCGATATTATGAAAGCCAGCCTCCAGTTACGCCTCTCTCAACACCTCGCGCTCACGCCGCAGTTGCAGCAATC
CATTCGATTGCTGCAACTGTCGACGCTGGAATTGCAACAGGAAGTTGCCACCGCTGTCGCCCAGAATCCATTGCTCGAGA
GCGATGACGATTGGGGCGGCAAGTCGTTGCGCGTCGCCAGTGATGGATCATTGGCATCGAGCGCCGGTACGGCCGCTTCC
AACGATGGCGCGCGCGGGGCGGATCGGCGGGACGGCGACGGTGCCGTGGACGGCGGCGCCGGGGCGGATGCGCGTGGCGA
TGGCGGCAACGACGGCGAACGACGTGACGAGCCGGCGCGCGACAGTAGCGACGACGGCCCGACCTGGAGTCTCGACGACT
ACGCGCGCGGTCCCTCGGGTGGCAATAGCGCCGGCAACGACGATGATGACTTGCCACCGATGCAGCTCGAGGAAGTCCCC
ACGAACCTGCGCGATTATCTGAACGGCCAGCTCGCACTGACCCGTACGGATGCACGCGACCGGGCCTTGGTAACTTTCCT
GATCGAGTCGATCGATGACGCCGGCTATCTGACGACCACGCTGGACGAAATCATCGATGAATTGTCCGAAGACAGCGGTG
TTGATCTCGATGATTTGACCAATGCGTTGACGTTGCTGCAAAGCTTCGACCCCCCTGGTGTAGGGGCACGTTCGCCGTCG
GAATGCCTGGCGCTGCAATTGCGCAGGCATGAACCAAGCGCGACGCGGACACTGGCGATCGAGATCGTCAATCATCATCT
CGAATTGCTGGCGGCGCGAGATTTTACGCGGCTGCGGCGCCAGTTGAAGGTCGACGACGACGCGCTGCGAGAAGCGCATC
AATTGATTCGTTCGCTCGAACCCTTCCCGGGCGCGGCCTATAGTAGCGCGGAAGCAGACTACGTGGTCCCGGACGTGCTT
GTTCGTAAGACCGGCCAGGGCTGGATCGCCGAGTTGAATCCCGAAGTCGTACCGAAACTCCGGATCAACAATCTGTATGC
CAATATCCTGCGCAATAACCGGGGCGATCCCGGCAGTGGTTCATTGCGTCAGCAACTTCAGGAAGCACGTTGGCTGATCA
AAAATATTCAGCAGCGTTTCGATACAATTTTGCGTGTGGCGCAAGCTATCGTGGAAAGGCAGAAGAATTTTTTTGCCCAT
GGCGAAATCGCCATGCGTCCCTTGGTTTTGCGCGAGATTGCTGATACGCTAGGTTTACACGAGTCGACGGTATCGCGCGT
CACCACAGGTAAGTACATGCTGACGCCGTCCGGGACGCTCGAATTCAAGTTTTTCTTCGGGTCGCATATCTCAACGGATA
CCGGCGGCTCGGCCTCATCCACAGCGATACGTGCACTGATCAAGCAATTGATAGGAGCAGAAGACCCGAAATCTCCGCTA
TCGGACAGCCGGATCGCCGAACTTCTCGCCGAACAAGGTTTCGTCGTCGCACGACGCACGGTTGCCAAGTACCGCGAAGC
GCTTCGCATTCCTGCTGTCAACCTCCGAAAGTCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(9-53)

Sigma-54, DNA binding domain (Sigma54_DBD)

(362-517)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(157-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

64.176

100

0.645