Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SKB18_RS06210 Genome accession   NZ_CP139163
Coordinates   1261626..1262993 (+) Length   455 a.a.
NCBI ID   WP_014636721.1    Uniprot ID   -
Organism   Streptococcus suis strain cnzyss2-311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1256626..1267993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SKB18_RS06190 - 1257039..1258745 (+) 1707 WP_012028548.1 ABC transporter ATP-binding protein -
  SKB18_RS06195 - 1258746..1260530 (+) 1785 WP_014636722.1 ABC transporter ATP-binding protein -
  SKB18_RS06200 - 1260636..1261079 (+) 444 WP_002939955.1 dUTP diphosphatase -
  SKB18_RS06205 - 1261086..1261619 (+) 534 WP_012028546.1 histidine phosphatase family protein -
  SKB18_RS06210 radA 1261626..1262993 (+) 1368 WP_014636721.1 DNA repair protein RadA Machinery gene
  SKB18_RS06215 - 1263117..1263611 (+) 495 WP_012027915.1 carbonic anhydrase -
  SKB18_RS06220 - 1263819..1264577 (+) 759 WP_002939965.1 TIGR00266 family protein -
  SKB18_RS06225 - 1264755..1265201 (+) 447 WP_012775372.1 LytTR family DNA-binding domain-containing protein -
  SKB18_RS06230 - 1265206..1265865 (+) 660 WP_012028544.1 LiaF transmembrane domain-containing protein -
  SKB18_RS06235 - 1265957..1267237 (+) 1281 WP_012027911.1 MFS transporter -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49889.41 Da        Isoelectric Point: 6.1911

>NTDB_id=907462 SKB18_RS06210 WP_014636721.1 1261626..1262993(+) (radA) [Streptococcus suis strain cnzyss2-311]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFMGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=907462 SKB18_RS06210 WP_014636721.1 1261626..1262993(+) (radA) [Streptococcus suis strain cnzyss2-311]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTACCTGGGTCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAACTCAATGAAGTGTCATCCATTCAAGTGGCTCGCACTAAGACTAACATGGAGGAGTTCAAC
CGCGTCCTCGGTGGCGGTGTGGTACCGGGGAGTCTAGTTCTCATTGGCGGCGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTGCAAGTATCCATTCAGCTGTCTACCATTGGCACCGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGAGCGGAACGCTTGGGCGACATTGACAGCGAGTTCTATCTCTATGCAGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGTCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTACGTGAAGTGACCAATGAGCTCATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGAACCTTGGCTGGACCGCGGACCTTGGAGCACATGGTAGACACCGTTCTCTATTTTGAAGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAATCGCTTCGGCTCCACCAATGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTCCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGAGCGACTGGCTCGG
CTATTGTCGTGACCATGGAGGGTACCCGCCCAATCCTTGCGGAAGTGCAGGCTCTGGTGACGCCGACTATGTTTGGCAAT
GCCAAGCGGACCACGACAGGACTGGATTTCAACCGTGCTAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
GCTCCAAAACCAAGACGCCTACCTCAAATCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTGGCAGTCGCAG
TTGCCCTTGCTTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATGGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGTATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

90.929

99.341

0.903
  radA Streptococcus pneumoniae R6

90.929

99.341

0.903
  radA Streptococcus pneumoniae Rx1

90.929

99.341

0.903
  radA Streptococcus pneumoniae TIGR4

90.929

99.341

0.903
  radA Streptococcus mitis SK321

90.708

99.341

0.901
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

99.56

0.622