Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SKB18_RS04325 Genome accession   NZ_CP139163
Coordinates   891584..892297 (-) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A142UPI2
Organism   Streptococcus suis strain cnzyss2-311     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 886584..897297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SKB18_RS04300 trxA 886988..887302 (-) 315 WP_012775426.1 thioredoxin -
  SKB18_RS04305 - 887509..888162 (-) 654 WP_011921818.1 GNAT family N-acetyltransferase -
  SKB18_RS04310 - 888186..890519 (-) 2334 WP_014636548.1 endonuclease MutS2 -
  SKB18_RS04315 - 890670..891218 (-) 549 WP_002935945.1 CvpA family protein -
  SKB18_RS04320 - 891215..891526 (-) 312 WP_002935948.1 hypothetical protein -
  SKB18_RS04325 treR 891584..892297 (-) 714 WP_012774930.1 trehalose operon repressor Regulator
  SKB18_RS04330 treP 892531..894525 (+) 1995 WP_014636547.1 PTS system trehalose-specific EIIBC component -
  SKB18_RS04335 treC 894606..896231 (+) 1626 WP_011921814.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=907442 SKB18_RS04325 WP_012774930.1 891584..892297(-) (treR) [Streptococcus suis strain cnzyss2-311]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=907442 SKB18_RS04325 WP_012774930.1 891584..892297(-) (treR) [Streptococcus suis strain cnzyss2-311]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142UPI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515