Detailed information NTG0907408

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ABRP50_RS22055
• Genome accession: NZ_CP158112
• Coordinates: 4598800..4599825 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain EC187792
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4593800..4604825

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRP50_RS22045 (ABRP50_22035)	rpmE	4596031..4596243 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
ABRP50_RS22050 (ABRP50_22040)	priA	4596446..4598644 (+)	2199	WP_001315935.1	primosomal protein N'	Machinery gene
ABRP50_RS22055 (ABRP50_22045)	cytR	4598800..4599825 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
ABRP50_RS22060 (ABRP50_22050)	ftsN	4599917..4600876 (+)	960	WP_000068834.1	cell division protein FtsN	-
ABRP50_RS22065 (ABRP50_22055)	hslV	4600969..4601499 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
ABRP50_RS22070 (ABRP50_22060)	hslU	4601509..4602840 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
ABRP50_RS22075 (ABRP50_22065)	menA	4602907..4603833 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ABRP50_RS22080 (ABRP50_22070)	rraA	4603926..4604411 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
ABRP50_RS22085 (ABRP50_22075)	zapB	4604496..4604741 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=907408 ABRP50_RS22055 WP_000644904.1 4598800..4599825(+) (cytR) [Escherichia coli strain EC187792]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=907408 ABRP50_RS22055 WP_000644904.1 4598800..4599825(+) (cytR) [Escherichia coli strain EC187792]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628