Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABRP50_RS14715 Genome accession   NZ_CP158112
Coordinates   3017363..3017992 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain EC187792     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3012363..3022992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRP50_RS14700 (ABRP50_14690) helD 3012605..3014659 (-) 2055 WP_000420536.1 DNA helicase IV -
  ABRP50_RS14705 (ABRP50_14695) yccF 3014782..3015228 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABRP50_RS14710 (ABRP50_14700) yccS 3015238..3017400 (+) 2163 WP_000875020.1 YccS family putative transporter -
  ABRP50_RS14715 (ABRP50_14705) sxy/tfoX 3017363..3017992 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABRP50_RS14720 (ABRP50_14710) sulA 3018211..3018720 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABRP50_RS14725 (ABRP50_14715) ompA 3019077..3020117 (+) 1041 WP_000750416.1 porin OmpA -
  ABRP50_RS14730 (ABRP50_14720) matP 3020193..3020645 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABRP50_RS14735 (ABRP50_14725) ycbZ 3020831..3022591 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=907385 ABRP50_RS14715 WP_000839153.1 3017363..3017992(-) (sxy/tfoX) [Escherichia coli strain EC187792]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=907385 ABRP50_RS14715 WP_000839153.1 3017363..3017992(-) (sxy/tfoX) [Escherichia coli strain EC187792]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1