Detailed information NTG0090736

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: TM2_RS00590
• Genome accession: NZ_AP025262
• Coordinates: 109503..110882 (+)
• Length: 459 a.a.
• NCBI ID: WP_017359160.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain TM2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 104503..115882

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TM2_RS00570 (TM2_00840)	-	104845..105309 (+)	465	WP_035391577.1	CtsR family transcriptional regulator	-
TM2_RS00575 (TM2_00850)	-	105324..105881 (+)	558	WP_007496258.1	UvrB/UvrC motif-containing protein	-
TM2_RS00580 (TM2_00860)	-	105886..106977 (+)	1092	WP_008345444.1	protein arginine kinase	-
TM2_RS00585 (TM2_00870)	clpC	106974..109409 (+)	2436	WP_007496263.1	ATP-dependent protease ATP-binding subunit ClpC	Regulator
TM2_RS00590 (TM2_00880)	radA	109503..110882 (+)	1380	WP_017359160.1	DNA repair protein RadA	Machinery gene
TM2_RS00595 (TM2_00890)	disA	110885..111964 (+)	1080	WP_007496267.1	DNA integrity scanning diadenylate cyclase DisA	-
TM2_RS00600 (TM2_00900)	-	112118..113218 (+)	1101	WP_003217214.1	PIN/TRAM domain-containing protein	-
TM2_RS00605 (TM2_00910)	ispD	113232..113921 (+)	690	WP_008345432.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
TM2_RS00610 (TM2_00920)	ispF	113925..114401 (+)	477	WP_007496273.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 49995.41 Da
• Isoelectric Point: 7.1218

>NTDB_id=90736 TM2_RS00590 WP_017359160.1 109503..110882(+) (radA) [Bacillus altitudinis strain TM2]
MAKSKSKFICQSCGYESAKWMGKCPGCGTWNSMTEEVVRKEPANRRSAFNHSVQTIQKPSPISAIETSEEPRIKTNLEEF
NRVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSAQLSDQNQNVLYISGEESIKQTKLRADRLGIESASLHVLAETDMEYIT
SAIQEMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAQLMKIAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNELGIFEMREEGLTEVLNPSEIFLEERSAGVSGSCVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFKDAAPHQADCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMFIPQANIDGWKKPRGIELVGVENVAEALRISLGGS

Nucleotide

• Length: 1380 bp

>NTDB_id=90736 TM2_RS00590 WP_017359160.1 109503..110882(+) (radA) [Bacillus altitudinis strain TM2]
ATGGCTAAGTCAAAATCAAAATTTATATGCCAATCGTGCGGTTATGAGTCAGCCAAATGGATGGGGAAATGTCCCGGCTG
CGGCACTTGGAACAGTATGACAGAAGAGGTCGTTCGTAAAGAGCCGGCAAATCGTCGAAGTGCGTTTAATCATTCTGTTC
AAACCATTCAAAAACCTTCACCTATATCTGCAATTGAAACATCCGAAGAACCCCGAATTAAAACGAATTTAGAAGAATTT
AACCGAGTATTAGGAAGTGGAATTGTCAAAGGTTCACTCGTTCTTATTGGCGGTGATCCTGGGATTGGGAAGTCCACACT
ATTATTACAAGTTTCAGCACAGCTATCAGATCAAAATCAGAATGTGTTATACATATCTGGTGAGGAATCAATCAAACAAA
CGAAGCTTAGGGCGGACCGTCTCGGTATTGAAAGTGCCTCTTTACATGTTTTGGCTGAAACCGATATGGAGTATATAACG
TCTGCTATACAAGAGATGAAACCCGCTTTTGTTGTGGTCGATTCAATTCAAACCGTTTATCAAAGCGATATCACGTCAGC
TCCTGGATCTGTTTCTCAGGTGAGGGAATGCACTGCGCAGCTGATGAAAATTGCCAAGACGAATGGTATTCCTATTTTTA
TTGTTGGTCATGTGACGAAGGAAGGCTCGATTGCTGGGCCGCGCCTTTTAGAGCATATGGTGGATACAGTTCTTTATTTT
GAAGGGGAGCGCCATCATACGTTTCGTATTTTACGGGCAGTGAAAAACCGTTTTGGTTCAACGAATGAATTAGGGATTTT
TGAAATGAGGGAGGAAGGGCTCACAGAGGTATTAAACCCATCAGAAATCTTCTTAGAAGAGCGGTCAGCAGGTGTATCTG
GATCGTGTGTTGTTGCCTCAATGGAAGGAACAAGACCTGTTCTAGTGGAGATACAAGCACTTATTTCACCGACGAGCTTT
GGGAATCCACGGAGAATGGCTACTGGCCTTGATCATAACCGAGTGTCATTGCTTATGGCCGTTTTAGAAAAACGGGTAGG
GCTGCTGCTGCAAAACCAAGATGCCTATTTAAAGGTCGCAGGTGGTGTGAAACTTGACGAACCAGCGATTGATTTGGCTA
TTGCCGTCAGCATTGCATCAAGCTTTAAAGATGCAGCGCCGCATCAAGCAGATTGCTTTATAGGAGAAGTGGGTCTGACG
GGAGAAGTCAGAAGAGTATCAAGAATTGAACAGCGTGTGCAGGAAGCTGCTAAACTAGGATTTAAACGAATGTTTATTCC
TCAGGCGAATATAGATGGATGGAAAAAACCGAGAGGGATTGAATTAGTCGGTGTAGAAAATGTAGCAGAGGCACTTCGTA
TTTCACTAGGGGGATCATAG

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (67-222)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (365-430)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	87.118	99.782	0.869
radA	Streptococcus mitis NCTC 12261	61.81	98.693	0.61
radA	Streptococcus pneumoniae Rx1	61.81	98.693	0.61
radA	Streptococcus pneumoniae D39	61.81	98.693	0.61
radA	Streptococcus pneumoniae R6	61.81	98.693	0.61
radA	Streptococcus pneumoniae TIGR4	61.81	98.693	0.61
radA	Streptococcus mitis SK321	61.81	98.693	0.61