Detailed information NTG0907339

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: SFA27_RS03280
• Genome accession: NZ_CP139139
• Coordinates: 715305..716654 (-)
• Length: 449 a.a.
• NCBI ID: WP_047379126.1
• Uniprot ID: A0A5B2UDM5
• Organism: Chryseobacterium sp. HR92
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 710305..721654

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SFA27_RS03265 (SFA27_03250)	-	710585..713803 (+)	3219	WP_407296273.1	S8 family peptidase	-
SFA27_RS03270 (SFA27_03255)	-	713885..714400 (+)	516	WP_047379128.1	DUF6702 family protein	-
SFA27_RS03275 (SFA27_03260)	-	714406..714999 (-)	594	WP_407296276.1	ACP phosphodiesterase	-
SFA27_RS03280 (SFA27_03265)	radA	715305..716654 (-)	1350	WP_047379126.1	DNA repair protein RadA	Machinery gene
SFA27_RS03285 (SFA27_03270)	-	716791..717360 (+)	570	WP_264516954.1	YceI family protein	-
SFA27_RS03290 (SFA27_03275)	-	717588..719195 (+)	1608	WP_047379124.1	CTP synthase	-
SFA27_RS03295 (SFA27_03280)	yidC	719374..721173 (+)	1800	WP_264516955.1	membrane protein insertase YidC	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49885.46 Da
• Isoelectric Point: 6.6944

>NTDB_id=907339 SFA27_RS03280 WP_047379126.1 715305..716654(-) (radA) [Chryseobacterium sp. HR92]
MAKLKTAYFCQNCGTQYPQWLGQCKNCGEWNTLVEEVVEKPSHKTPPFSKTKQHVINIVEVVTSEEPRIKTPSDELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLTDIQNPNCFLFTETSLEKILHEAKKL
EPDFMIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASVLSSNEDIAISEHYCFAGEIGLSGEIRPV
AQVEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKIEDFHERLF

Nucleotide

• Length: 1350 bp

>NTDB_id=907339 SFA27_RS03280 WP_047379126.1 715305..716654(-) (radA) [Chryseobacterium sp. HR92]
ATGGCAAAACTGAAAACAGCATATTTCTGTCAAAACTGCGGAACTCAATATCCACAATGGCTCGGACAATGTAAAAATTG
TGGAGAATGGAACACTCTGGTGGAAGAAGTGGTTGAAAAACCTTCTCATAAAACTCCTCCTTTCTCAAAAACCAAACAAC
ATGTAATCAACATTGTTGAAGTGGTAACGAGTGAAGAGCCAAGAATAAAAACTCCTTCTGATGAATTGAACCGCGTTTTA
GGAGGCGGAATTGTTTTAGGTTCCGTTACTTTGATTGGTGGTGAACCGGGAATCGGAAAGTCTACTCTTCTGCTTCAGCT
TGCTTTGAAAATGAAGAAAAAAATCTTCTATGTTTCGGGGGAAGAAAGTGCCTCTCAGATCAAGATGAGAGCAGACAGGC
TTACGGATATTCAAAATCCAAACTGCTTTCTTTTCACTGAAACATCATTGGAAAAAATCCTTCATGAGGCAAAAAAACTG
GAACCTGATTTTATGATCATTGATTCCATTCAAACCCTGCAGTCTCAACTGATAGAGAGTTCACCGGGAACCGTTTCCCA
AATCCGCGAATGCTCCAATGAGATCATCAAATATGCCAAAGAAAATAATACTCCTGTATTTCTTGTAGGGCACATCACCA
AAGATGGTCAGATTGCCGGACCAAAGGTACTGGAACATATGGTGGATGTGGTTTTGAATTTTGATGGAGACCGGAATCAC
CTTTTCAGATTGCTGAGAGCCAATAAAAACCGTTTTGGATCTACTTCAGAAATTGGCATCTATGAAATGGTTTCTCAGGG
ATTGAAAGAAATTAAAAATCCTTCTGAAATACTGATTACAAAGAAATTTGAAGAACTTTCCGGGAACTCCGTTGCCGTAA
CACTGGAAGGAAACCGGCCTATGCTTCTGGAGATCCAGGCATTGGTAAGTACTGCCGTTTATGGTACTCCTCAAAGAAGT
TCTACCGGTTTTGATTCCAAAAGATTGAATATGCTTTTGGCTGTACTGGAAAAAAGAGCAGGTTTCCAGCTTGGAGCTAA
AGACGTTTTCCTGAATATTACCGGAGGAATAAAAACAGATGATCCTGCACTGGATCTGGCAGTGGTAGCTTCTGTTCTTT
CATCCAATGAGGATATTGCGATCTCAGAACATTACTGTTTTGCCGGAGAAATCGGATTAAGTGGTGAAATACGTCCTGTA
GCACAGGTGGAACAAAGAATTACTGAGGCTGAAAAACTGGGTTATGAAAAAATATTTGTTTCCAATCTTAATAAAATTCC
GAAGAGAAAGTTTGGCATAAAGATCGAAGAAGTGAGTAAGATTGAGGATTTTCATGAGAGGCTTTTTTAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (65-217)

• Subunit ChlI of Mg-chelatase (ChlI) (338-423)

3D structure

• AlphaFold DB: A0A5B2UDM5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.894	100	0.492
radA	Streptococcus pneumoniae Rx1	48.026	100	0.488
radA	Streptococcus pneumoniae D39	48.026	100	0.488
radA	Streptococcus pneumoniae R6	48.026	100	0.488
radA	Streptococcus pneumoniae TIGR4	48.026	100	0.488
radA	Streptococcus mitis NCTC 12261	48.026	100	0.488
radA	Streptococcus mitis SK321	49.882	94.209	0.47