Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ABNQ20_RS24630 Genome accession   NZ_CP158051
Coordinates   5313272..5314297 (-) Length   341 a.a.
NCBI ID   WP_058161431.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain P1110     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5308272..5319297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNQ20_RS24615 (ABNQ20_24610) - 5308756..5309763 (+) 1008 WP_003092265.1 TolB family protein -
  ABNQ20_RS24620 (ABNQ20_24615) mutS 5309889..5312456 (+) 2568 WP_003122151.1 DNA mismatch repair protein MutS -
  ABNQ20_RS24625 (ABNQ20_24620) fdxA 5312523..5312846 (+) 324 WP_003092272.1 ferredoxin FdxA -
  ABNQ20_RS24630 (ABNQ20_24625) rpoS 5313272..5314297 (-) 1026 WP_058161431.1 RNA polymerase sigma factor RpoS Regulator
  ABNQ20_RS24635 (ABNQ20_24630) - 5314445..5314759 (-) 315 WP_000349485.1 helix-turn-helix domain-containing protein -
  ABNQ20_RS24640 (ABNQ20_24635) - 5314901..5315905 (+) 1005 WP_040363373.1 permease -
  ABNQ20_RS24645 (ABNQ20_24640) - 5315918..5317195 (+) 1278 WP_000610830.1 ISL3 family transposase -
  ABNQ20_RS24650 (ABNQ20_24645) - 5317374..5318267 (-) 894 WP_003138035.1 peptidoglycan DD-metalloendopeptidase family protein -
  ABNQ20_RS24655 (ABNQ20_24650) - 5318313..5318948 (-) 636 WP_003098558.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 39027.20 Da        Isoelectric Point: 5.1403

>NTDB_id=907300 ABNQ20_RS24630 WP_058161431.1 5313272..5314297(-) (rpoS) [Pseudomonas aeruginosa strain P1110]
MLSTRNSGYPKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFS
PLLTPEEEVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW
WIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGP
DSDKTLLDTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVE
ALKRLREILEKNGLSSDALFQ

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=907300 ABNQ20_RS24630 WP_058161431.1 5313272..5314297(-) (rpoS) [Pseudomonas aeruginosa strain P1110]
ATTTTATCAACCAGAAATTCCGGATACCCCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGA
GCCCGGCATCATGCTGGACGAGTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCT
CTTCCAAACAACACAAGCACATCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCG
CCCCTGTTGACGCCCGAAGAGGAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGAT
CGAGAGCAACCTGCGGTTGGTGGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGG
AAGGCAACCTAGGCCTGATCCGCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGG
TGGATCCGCCAGACCATCGAACGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCT
CAACGTCTACCTGCGTGCGGCGCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGC
TGGAGAAGCCGGTCGCCGAGGTCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCG
GACTCGGACAAGACCCTGCTGGATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCT
CAGCGAAAGCATCGACCAGTGGCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCG
GGCACGAAAGCAGCACGCTGGAAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAG
GCGCTGAAGCGCCTGCGGGAGATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(106-175)

Sigma-70, region 4 (Sigma70_r4)

(274-327)

Sigma-70 region 3 (Sigma70_r3)

(186-260)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(68-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

66.463

96.188

0.639