Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ABNQ20_RS02185 Genome accession   NZ_CP158051
Coordinates   467372..467737 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain P1110     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 462372..472737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNQ20_RS02155 (ABNQ20_02150) pyrR 462994..463506 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  ABNQ20_RS02160 (ABNQ20_02155) ruvX 463618..464052 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  ABNQ20_RS02165 (ABNQ20_02160) - 464052..464621 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  ABNQ20_RS02170 (ABNQ20_02165) - 464670..465563 (-) 894 WP_003084580.1 TonB family protein -
  ABNQ20_RS02175 (ABNQ20_02170) gshB 465710..466663 (-) 954 WP_003100943.1 glutathione synthase -
  ABNQ20_RS02180 (ABNQ20_02175) pilG 466918..467325 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  ABNQ20_RS02185 (ABNQ20_02180) pilH 467372..467737 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  ABNQ20_RS02190 (ABNQ20_02185) - 467788..468324 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  ABNQ20_RS02195 (ABNQ20_02190) - 468601..468915 (-) 315 WP_000349485.1 helix-turn-helix domain-containing protein -
  ABNQ20_RS02200 (ABNQ20_02195) - 469057..470061 (+) 1005 WP_040363373.1 permease -
  ABNQ20_RS02205 (ABNQ20_02200) - 470074..471351 (+) 1278 WP_000610830.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=907247 ABNQ20_RS02185 WP_003084587.1 467372..467737(+) (pilH) [Pseudomonas aeruginosa strain P1110]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=907247 ABNQ20_RS02185 WP_003084587.1 467372..467737(+) (pilH) [Pseudomonas aeruginosa strain P1110]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCGCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364