Detailed information NTG0907158

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABNQ21_RS06745
• Genome accession: NZ_CP158050
• Coordinates: 1439816..1440820 (+)
• Length: 334 a.a.
• NCBI ID: WP_003143264.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain Y010
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1434816..1445820

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNQ21_RS06715 (ABNQ21_06715)	fghA	1434908..1435759 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
ABNQ21_RS06720 (ABNQ21_06720)	ispF	1435830..1436303 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABNQ21_RS06725 (ABNQ21_06725)	truD	1436300..1437367 (+)	1068	WP_033937525.1	tRNA pseudouridine(13) synthase TruD	-
ABNQ21_RS06730 (ABNQ21_06730)	surE	1437355..1438104 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ABNQ21_RS06735 (ABNQ21_06735)	-	1438137..1438772 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ABNQ21_RS06740 (ABNQ21_06740)	-	1438818..1439711 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
ABNQ21_RS06745 (ABNQ21_06745)	rpoS	1439816..1440820 (+)	1005	WP_003143264.1	RNA polymerase sigma factor RpoS	Regulator
ABNQ21_RS06750 (ABNQ21_06750)	fdxA	1441247..1441570 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ABNQ21_RS06755 (ABNQ21_06755)	mutS	1441637..1444204 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ABNQ21_RS06760 (ABNQ21_06760)	-	1444330..1445337 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38254.43 Da
• Isoelectric Point: 5.0507

>NTDB_id=907158 ABNQ21_RS06745 WP_003143264.1 1439816..1440820(+) (rpoS) [Pseudomonas aeruginosa strain Y010]
MALKKEGPEFDRDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=907158 ABNQ21_RS06745 WP_003143264.1 1439816..1440820(+) (rpoS) [Pseudomonas aeruginosa strain Y010]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCGCGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.381	83.234	0.611