Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   SH598_RS07230 Genome accession   NZ_CP139086
Coordinates   1411546..1412142 (+) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus velezensis strain YN-2A     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1406546..1417142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH598_RS07200 (SH598_07200) - 1406758..1407213 (+) 456 WP_033574618.1 flavodoxin -
  SH598_RS07205 (SH598_07205) dapD 1407295..1408005 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  SH598_RS07210 (SH598_07210) - 1408076..1409200 (+) 1125 WP_012117444.1 N-acetyldiaminopimelate deacetylase -
  SH598_RS07215 (SH598_07215) - 1409261..1409506 (+) 246 WP_003154596.1 YkuS family protein -
  SH598_RS07220 (SH598_07220) - 1409540..1410346 (-) 807 WP_015417373.1 mechanosensitive ion channel family protein -
  SH598_RS07225 (SH598_07225) - 1410635..1411093 (+) 459 WP_015417374.1 redoxin domain-containing protein -
  SH598_RS07230 (SH598_07230) rok 1411546..1412142 (+) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  SH598_RS07235 (SH598_07235) - 1412163..1413155 (-) 993 WP_012117448.1 hypothetical protein -
  SH598_RS07240 (SH598_07240) - 1413301..1413903 (+) 603 WP_039251605.1 molybdenum cofactor guanylyltransferase -
  SH598_RS07245 (SH598_07245) - 1413955..1414974 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  SH598_RS07250 (SH598_07250) glp 1414992..1416284 (+) 1293 WP_015417375.1 gephyrin-like molybdotransferase Glp -
  SH598_RS07255 (SH598_07255) mobB 1416245..1416766 (+) 522 WP_015417376.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=907157 SH598_RS07230 WP_012117447.1 1411546..1412142(+) (rok) [Bacillus velezensis strain YN-2A]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=907157 SH598_RS07230 WP_012117447.1 1411546..1412142(+) (rok) [Bacillus velezensis strain YN-2A]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCTGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843