Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   SH598_RS04250 Genome accession   NZ_CP139086
Coordinates   868784..869575 (+) Length   263 a.a.
NCBI ID   WP_062623298.1    Uniprot ID   -
Organism   Bacillus velezensis strain YN-2A     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 863784..874575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH598_RS04225 (SH598_04225) - 865779..866663 (+) 885 WP_062623296.1 PhzF family phenazine biosynthesis isomerase -
  SH598_RS04230 (SH598_04230) - 866740..867324 (+) 585 WP_007408549.1 nitroreductase -
  SH598_RS04235 (SH598_04235) - 867363..867554 (-) 192 WP_003155508.1 YfhD family protein -
  SH598_RS04240 (SH598_04240) - 867625..867735 (-) 111 WP_003155504.1 YfhE family protein -
  SH598_RS04245 (SH598_04245) - 867793..868692 (-) 900 WP_062623297.1 TIGR01777 family oxidoreductase -
  SH598_RS04250 (SH598_04250) recX 868784..869575 (+) 792 WP_062623298.1 recombination regulator RecX Regulator
  SH598_RS04255 (SH598_04255) - 869582..869896 (+) 315 WP_007408553.1 YfhH family protein -
  SH598_RS04260 (SH598_04260) - 870041..871234 (+) 1194 WP_025284446.1 MFS transporter -
  SH598_RS04265 (SH598_04265) - 871274..871663 (-) 390 WP_062623299.1 DUF2606 family protein -
  SH598_RS04270 (SH598_04270) - 871626..872537 (-) 912 WP_015239429.1 serine protease -
  SH598_RS04275 (SH598_04275) - 872682..872834 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  SH598_RS04280 (SH598_04280) - 872958..873227 (+) 270 WP_003155492.1 YfhJ family protein -
  SH598_RS04285 (SH598_04285) - 873355..873882 (+) 528 WP_062623300.1 SH3 domain-containing protein -
  SH598_RS04290 (SH598_04290) - 873968..874303 (+) 336 WP_062623301.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31016.21 Da        Isoelectric Point: 6.0921

>NTDB_id=907140 SH598_RS04250 WP_062623298.1 868784..869575(+) (recX) [Bacillus velezensis strain YN-2A]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDIVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSTFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=907140 SH598_RS04250 WP_062623298.1 868784..869575(+) (recX) [Bacillus velezensis strain YN-2A]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATCGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGCACGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTCAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTTTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795