Detailed information NTG0907136

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: SH598_RS02025
• Genome accession: NZ_CP139086
• Coordinates: 431483..432631 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain YN-2A
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 426483..437631

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SH598_RS02005 (SH598_02005)	-	426891..427574 (-)	684	WP_015416808.1	ABC transporter ATP-binding protein	-
SH598_RS02010 (SH598_02010)	-	427589..429025 (-)	1437	WP_015416809.1	ABC transporter permease	-
SH598_RS02015 (SH598_02015)	-	429238..429921 (+)	684	WP_007410267.1	response regulator transcription factor	-
SH598_RS02020 (SH598_02020)	-	429908..431341 (+)	1434	WP_162303988.1	HAMP domain-containing sensor histidine kinase	-
SH598_RS02025 (SH598_02025)	rapC	431483..432631 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
SH598_RS02030 (SH598_02030)	phrC	432615..432734 (+)	120	WP_031378677.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
SH598_RS02035 (SH598_02035)	-	432883..432993 (-)	111	WP_369719092.1	YjcZ family sporulation protein	-
SH598_RS02040 (SH598_02040)	-	433073..434437 (-)	1365	WP_015416811.1	aspartate kinase	-
SH598_RS02045 (SH598_02045)	ceuB	434851..435804 (+)	954	WP_015239156.1	ABC transporter permease	Machinery gene
SH598_RS02050 (SH598_02050)	-	435794..436741 (+)	948	WP_040238557.1	iron chelate uptake ABC transporter family permease subunit	-
SH598_RS02055 (SH598_02055)	-	436735..437493 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=907136 SH598_RS02025 WP_007410270.1 431483..432631(+) (rapC) [Bacillus velezensis strain YN-2A]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=907136 SH598_RS02025 WP_007410270.1 431483..432631(+) (rapC) [Bacillus velezensis strain YN-2A]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568