Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SIN07_RS03760 Genome accession   NZ_CP139080
Coordinates   797899..799701 (+) Length   600 a.a.
NCBI ID   WP_057773016.1    Uniprot ID   -
Organism   Pediococcus inopinatus strain WiKim0108     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 792899..804701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIN07_RS03735 (SIN07_03735) - 793619..794128 (-) 510 WP_057775610.1 hypothetical protein -
  SIN07_RS03740 (SIN07_03740) - 794334..795074 (+) 741 WP_057775608.1 MBL fold metallo-hydrolase -
  SIN07_RS03745 (SIN07_03745) spxA 795408..795806 (+) 399 WP_063697853.1 transcriptional regulator SpxA -
  SIN07_RS03750 (SIN07_03750) - 795932..796645 (+) 714 WP_063697851.1 adaptor protein MecA -
  SIN07_RS03755 (SIN07_03755) - 796744..797856 (+) 1113 WP_063697847.1 competence protein CoiA -
  SIN07_RS03760 (SIN07_03760) pepF 797899..799701 (+) 1803 WP_057773016.1 oligoendopeptidase F Regulator
  SIN07_RS03765 (SIN07_03765) - 799781..800395 (-) 615 WP_063697844.1 DsbA family protein -
  SIN07_RS03770 (SIN07_03770) - 800669..801319 (+) 651 WP_057773020.1 GTP pyrophosphokinase family protein -
  SIN07_RS03775 (SIN07_03775) - 801326..802132 (+) 807 WP_063697841.1 NAD kinase -
  SIN07_RS03780 (SIN07_03780) - 802122..803027 (+) 906 WP_063697838.1 RluA family pseudouridine synthase -
  SIN07_RS03785 (SIN07_03785) mgtE 803046..804398 (+) 1353 WP_057773027.1 magnesium transporter -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68680.30 Da        Isoelectric Point: 5.4934

>NTDB_id=907075 SIN07_RS03760 WP_057773016.1 797899..799701(+) (pepF) [Pediococcus inopinatus strain WiKim0108]
MSEIKQLPKRSEVPIELTWDLSTIFKNKEAVNKAIAELHPRVNELVKLAGGLDKDSNSLLTAIRSELEIESQLERIYVYA
ELKNDQDTSNNQNQALKDQVTSLVAKVSAKLAWFEPEILAIPKATLEKYQENNTELKPYQHYFEVLNLKKNHVLTTKEEA
ILAGAGSVFEVSSNVFGILDNSDLKFPFVKDEAGEAVQLSQGVYSTLLQSTEQSVRKEAFEQLYAVYEQFKNTFAMTLAG
EVKVHNFKAQIRGYKDARQAAMSANAIPESVYSNLITEVHDHLDLLHRYVGLRKKILNLKELHMYDLYTPITGKSPLSYT
YQEAQKEAKAALQIMGSDYVGHVEDAFKNRWIDVVENEGKRSGAYSSGVYGTNPFMLLNWHNDLDNLFTLVHEMGHSMHS
YYTTHNQPYQYGDYPIFVAEIASTTNENILTQYLLDKYDDPQIKLFVLNHYLDGFKGTVYRQTQFAEFEQFIHETDARGE
ALTAEMMSDYYGKLNHRYYGNDVINDSQIKSEWTRIPHFYYNFYVYQYATGFAAASTLANGISSKEPHARENYLNYLKSG
SSDFPLNVMKKAGVNMAEKQYLEDAFAVFEKRLNEFEALL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=907075 SIN07_RS03760 WP_057773016.1 797899..799701(+) (pepF) [Pediococcus inopinatus strain WiKim0108]
ATGTCGGAAATTAAGCAATTACCAAAACGTAGTGAAGTACCAATTGAATTAACTTGGGATCTTTCAACAATTTTTAAAAA
TAAAGAGGCTGTTAATAAGGCTATCGCCGAGTTACATCCACGGGTAAATGAGCTAGTGAAGCTTGCTGGTGGTCTGGACA
AGGACAGCAATAGTTTGCTAACAGCTATTCGAAGCGAGCTTGAAATTGAAAGCCAACTGGAACGTATTTATGTTTATGCA
GAACTAAAAAATGATCAAGATACTTCAAATAATCAAAATCAAGCACTAAAAGATCAAGTCACTAGTTTAGTGGCCAAGGT
GTCTGCAAAATTAGCTTGGTTTGAACCAGAAATTTTAGCAATCCCTAAAGCTACTCTGGAAAAATATCAAGAAAATAATA
CAGAACTAAAACCTTATCAGCATTACTTTGAAGTACTTAACTTAAAGAAAAATCATGTTCTTACAACAAAAGAAGAAGCC
ATTTTGGCTGGTGCAGGATCCGTTTTTGAAGTTTCTTCTAATGTTTTTGGAATCTTAGATAATTCTGATCTCAAGTTTCC
GTTCGTAAAAGATGAGGCCGGAGAAGCGGTCCAATTGTCTCAAGGCGTGTATTCAACCCTGCTGCAGTCAACTGAGCAGT
CTGTTCGTAAAGAAGCCTTTGAACAGCTTTACGCAGTGTATGAGCAGTTTAAAAATACGTTTGCCATGACACTTGCCGGA
GAAGTCAAGGTTCATAATTTCAAAGCACAAATTAGAGGGTATAAAGATGCCCGTCAGGCTGCTATGAGTGCAAATGCAAT
TCCAGAATCGGTTTATTCTAATTTGATAACTGAGGTGCATGATCATTTGGATTTACTTCATAGGTATGTCGGTTTACGGA
AGAAGATTCTTAATTTAAAAGAATTACATATGTATGATTTATACACACCGATTACAGGAAAATCGCCTTTAAGCTACACG
TATCAGGAAGCACAAAAAGAAGCTAAAGCAGCCCTTCAAATTATGGGTAGTGATTATGTGGGCCACGTGGAGGACGCGTT
TAAGAACCGGTGGATTGATGTTGTTGAAAATGAAGGTAAAAGAAGTGGTGCTTATTCTTCAGGTGTGTATGGGACCAATC
CGTTCATGCTACTTAACTGGCACAATGATTTGGACAATTTATTTACATTGGTCCATGAGATGGGACACAGTATGCACAGC
TACTACACAACCCATAATCAACCTTATCAATATGGTGATTATCCGATTTTTGTTGCTGAAATTGCGTCGACAACTAATGA
AAATATTTTGACACAGTATCTTTTAGATAAGTATGATGATCCACAAATTAAGTTGTTCGTGCTGAACCATTATCTAGATG
GATTTAAAGGGACAGTTTATCGACAAACACAATTTGCCGAATTTGAACAATTTATTCATGAGACAGATGCCCGCGGAGAA
GCCCTAACTGCAGAAATGATGTCGGATTATTACGGTAAATTAAATCATCGTTATTATGGGAATGATGTGATAAATGATTC
ACAAATTAAATCAGAATGGACTCGGATCCCGCACTTTTACTATAATTTTTATGTTTATCAATATGCAACTGGTTTTGCGG
CTGCATCAACTTTGGCTAACGGTATTTCATCAAAAGAACCACATGCAAGGGAAAACTATTTAAACTATTTGAAGTCAGGT
AGTTCTGATTTTCCTTTGAATGTGATGAAAAAAGCCGGGGTTAATATGGCTGAAAAACAATATTTAGAAGACGCGTTTGC
TGTGTTTGAAAAGCGCTTGAATGAATTCGAAGCCTTACTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.178

99

0.507