Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SIN07_RS02200 Genome accession   NZ_CP139080
Coordinates   497143..498513 (+) Length   456 a.a.
NCBI ID   WP_057773852.1    Uniprot ID   -
Organism   Pediococcus inopinatus strain WiKim0108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 492143..503513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIN07_RS02175 (SIN07_02175) - 492793..493464 (+) 672 WP_057773862.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  SIN07_RS02180 (SIN07_02180) - 493887..495269 (-) 1383 WP_063698361.1 aminopeptidase C -
  SIN07_RS02185 (SIN07_02185) rpiA 495323..496009 (-) 687 WP_057773858.1 ribose-5-phosphate isomerase RpiA -
  SIN07_RS02190 (SIN07_02190) - 495996..496334 (-) 339 WP_057773856.1 GNAT family N-acetyltransferase -
  SIN07_RS02195 (SIN07_02195) - 496525..497061 (+) 537 WP_057773854.1 hypothetical protein -
  SIN07_RS02200 (SIN07_02200) radA 497143..498513 (+) 1371 WP_057773852.1 DNA repair protein RadA Machinery gene
  SIN07_RS02205 (SIN07_02205) - 498691..499821 (+) 1131 WP_057773850.1 PIN/TRAM domain-containing protein -
  SIN07_RS02210 (SIN07_02210) gltX 499947..501434 (+) 1488 WP_063698359.1 glutamate--tRNA ligase -
  SIN07_RS02215 (SIN07_02215) cysS 501588..502994 (+) 1407 WP_063698357.1 cysteine--tRNA ligase -
  SIN07_RS02220 (SIN07_02220) - 502998..503417 (+) 420 WP_057773845.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50028.70 Da        Isoelectric Point: 9.1989

>NTDB_id=907068 SIN07_RS02200 WP_057773852.1 497143..498513(+) (radA) [Pediococcus inopinatus strain WiKim0108]
MAKAKTQFVCQNCGYVSPRFLGRCPSCGQWNTLVEERMGAEKENHKARVSFEGKRAKPQILSEVDMTEAPRVKTGLKEFN
RVLGGGIVSGSLVLIGGDPGIGKSTLMLQISGQLSETKRRVLYVSGEESAAQIKMRAERLHVASENFYLFPETDMTNIQD
AIKKIKPSFVIIDSIQTMQEPDIQSAVGSVAQVREVTAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMRESGLNEVANPSEIFLEERLKDATGSAIVVSMEGTRPILVEVQALMTPTTYG
NAKRTASGLDHNRVSLIMAVLEKRANFLLQNQDAYLKAAGGVKLDEPAIDLAIAISIASSYRNIGTDPMDAFVGEIGLTG
EVRRVSRIEQRVAEAQKLGFKRIYVPKNNLQGWTPPKGIQVVGVATLSDALKRVFH

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=907068 SIN07_RS02200 WP_057773852.1 497143..498513(+) (radA) [Pediococcus inopinatus strain WiKim0108]
ATGGCAAAAGCAAAAACTCAGTTTGTTTGTCAAAACTGCGGGTACGTTTCACCTCGTTTCTTGGGTCGTTGTCCAAGCTG
CGGACAATGGAATACTTTGGTTGAAGAACGAATGGGAGCCGAGAAAGAAAATCATAAGGCTCGGGTTAGTTTTGAAGGTA
AACGGGCTAAACCACAAATCCTTAGCGAAGTTGATATGACTGAAGCACCACGAGTAAAGACTGGATTAAAAGAATTTAAT
CGTGTTTTAGGTGGTGGGATTGTTTCTGGGTCTTTAGTCCTAATTGGTGGTGATCCAGGAATTGGAAAATCCACTTTGAT
GCTTCAAATTTCAGGTCAATTAAGTGAGACCAAGCGCCGCGTTTTATATGTTTCTGGGGAAGAAAGTGCCGCACAAATAA
AAATGCGCGCCGAGCGTCTGCATGTAGCTAGCGAAAATTTCTATCTATTTCCAGAAACAGATATGACAAACATTCAGGAT
GCTATCAAGAAAATCAAGCCTAGTTTTGTGATTATTGATTCGATTCAGACCATGCAGGAACCTGATATTCAGTCGGCAGT
CGGAAGTGTGGCACAGGTTCGCGAAGTCACGGCTGAATTAATGCAGATTGCCAAAACCAATAACATCACGATTTTTATTG
TTGGACACGTGACTAAAGGCGGTGCGATTGCAGGGCCAAAAATCCTCGAACATATGGTGGATACTGTGCTGTACTTTGAA
GGTGATCTGCATCATACTTATCGGATTTTACGGGCAGTAAAAAACCGGTTTGGTTCGACAAATGAACTGGGAATTTTTGA
AATGCGTGAATCTGGTTTGAACGAAGTGGCCAACCCTTCAGAGATTTTCCTTGAAGAGCGTTTGAAAGATGCAACTGGTT
CGGCAATTGTAGTATCAATGGAAGGTACACGGCCCATTTTGGTTGAGGTTCAAGCGCTTATGACGCCCACAACCTATGGA
AATGCTAAGCGGACGGCAAGTGGATTAGACCACAATCGAGTTTCATTGATTATGGCTGTTTTGGAAAAGCGGGCAAACTT
CTTGCTGCAAAACCAAGATGCTTATCTGAAGGCAGCTGGCGGGGTGAAATTGGATGAACCAGCGATTGATTTGGCGATTG
CAATTAGTATTGCTTCCAGTTATCGAAATATCGGAACGGACCCTATGGATGCTTTTGTGGGCGAAATTGGGCTGACCGGT
GAGGTGCGACGGGTAAGCCGGATTGAGCAACGGGTGGCAGAGGCTCAAAAGCTTGGTTTCAAAAGGATTTACGTACCAAA
GAATAACCTGCAAGGATGGACACCACCAAAGGGGATTCAGGTCGTTGGTGTGGCAACGTTGAGTGATGCGTTGAAGCGGG
TGTTCCACTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

69.011

99.781

0.689
  radA Streptococcus mitis SK321

68.791

99.781

0.686
  radA Streptococcus pneumoniae Rx1

68.791

99.781

0.686
  radA Streptococcus pneumoniae D39

68.791

99.781

0.686
  radA Streptococcus pneumoniae R6

68.791

99.781

0.686
  radA Streptococcus pneumoniae TIGR4

68.791

99.781

0.686
  radA Bacillus subtilis subsp. subtilis str. 168

66.225

99.342

0.658