Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   SH592_RS11580 Genome accession   NZ_CP139053
Coordinates   2432702..2433502 (-) Length   266 a.a.
NCBI ID   WP_015417798.1    Uniprot ID   -
Organism   Bacillus velezensis strain Y-4     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2427702..2438502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH592_RS11550 (SH592_11550) - 2428242..2428874 (+) 633 WP_007408365.1 helix-turn-helix domain-containing protein -
  SH592_RS11555 (SH592_11555) - 2429171..2429308 (+) 138 WP_014470646.1 hypothetical protein -
  SH592_RS11560 (SH592_11560) - 2429402..2430520 (+) 1119 WP_032863662.1 NADH-dependent flavin oxidoreductase -
  SH592_RS11565 (SH592_11565) - 2430646..2430858 (+) 213 WP_007408362.1 spore germination protein -
  SH592_RS11570 (SH592_11570) - 2430984..2431196 (+) 213 WP_003153181.1 spore germination protein -
  SH592_RS11575 (SH592_11575) alr 2431372..2432553 (+) 1182 WP_012117960.1 alanine racemase -
  SH592_RS11580 (SH592_11580) spo0A 2432702..2433502 (-) 801 WP_015417798.1 sporulation transcription factor Spo0A Regulator
  SH592_RS11585 (SH592_11585) spoIVB 2433783..2435063 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  SH592_RS11590 (SH592_11590) recN 2435227..2436957 (-) 1731 WP_015417799.1 DNA repair protein RecN Machinery gene
  SH592_RS11595 (SH592_11595) ahrC 2436989..2437438 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  SH592_RS11600 (SH592_11600) - 2437535..2438380 (-) 846 WP_007612503.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29657.13 Da        Isoelectric Point: 6.1630

>NTDB_id=907029 SH592_RS11580 WP_015417798.1 2432702..2433502(-) (spo0A) [Bacillus velezensis strain Y-4]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRNQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=907029 SH592_RS11580 WP_015417798.1 2432702..2433502(-) (spo0A) [Bacillus velezensis strain Y-4]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCAGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATTCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCTGCGCAAAGCAGCATTATCCGCAACCAGCCTGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACTGCAAGCCGTGTAGAACGGG
CCATCCGGCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATCGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAGCCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

94.757

100

0.951