Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   SH592_RS01815 Genome accession   NZ_CP139053
Coordinates   370296..370694 (-) Length   132 a.a.
NCBI ID   WP_015416782.1    Uniprot ID   -
Organism   Bacillus velezensis strain Y-4     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 365296..375694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH592_RS01790 (SH592_01790) - 365468..366670 (+) 1203 WP_015416778.1 GTP-binding protein -
  SH592_RS01795 (SH592_01795) - 366735..367871 (+) 1137 WP_015416779.1 zinc-dependent alcohol dehydrogenase -
  SH592_RS01800 (SH592_01800) - 367886..368320 (+) 435 WP_033575151.1 RDD family protein -
  SH592_RS01805 (SH592_01805) - 368437..368715 (+) 279 WP_263612330.1 YckD family protein -
  SH592_RS01810 (SH592_01810) - 368819..370255 (+) 1437 WP_015416781.1 glycoside hydrolase family 1 protein -
  SH592_RS01815 (SH592_01815) nin/comJ 370296..370694 (-) 399 WP_015416782.1 competence protein ComJ Regulator
  SH592_RS01820 (SH592_01820) nucA/comI 370715..371152 (-) 438 WP_015416783.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  SH592_RS01825 (SH592_01825) hxlB 371510..372067 (-) 558 WP_039252823.1 6-phospho-3-hexuloisomerase -
  SH592_RS01830 (SH592_01830) hxlA 372064..372699 (-) 636 WP_015416785.1 3-hexulose-6-phosphate synthase -
  SH592_RS01835 (SH592_01835) - 372931..373293 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15024.00 Da        Isoelectric Point: 4.9712

>NTDB_id=907000 SH592_RS01815 WP_015416782.1 370296..370694(-) (nin/comJ) [Bacillus velezensis strain Y-4]
MNKSWKPQELTISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAASM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=907000 SH592_RS01815 WP_015416782.1 370296..370694(-) (nin/comJ) [Bacillus velezensis strain Y-4]
TTGAATAAATCATGGAAACCGCAAGAACTGACCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCTCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758