Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   SDC64_RS15220 Genome accession   NZ_CP139048
Coordinates   3201505..3202656 (+) Length   383 a.a.
NCBI ID   WP_005092484.1    Uniprot ID   A0A372MNT8
Organism   Acinetobacter haemolyticus strain JS-1us     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3196505..3207656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC64_RS15200 (SDC64_15200) - 3197419..3198177 (+) 759 WP_161417040.1 hypothetical protein -
  SDC64_RS15205 (SDC64_15205) - 3198221..3200317 (-) 2097 WP_320532720.1 TonB-dependent copper receptor -
  SDC64_RS15210 (SDC64_15210) - 3200391..3200828 (-) 438 WP_004637503.1 DUF2946 family protein -
  SDC64_RS15215 (SDC64_15215) def 3200849..3201379 (-) 531 WP_004637502.1 peptide deformylase -
  SDC64_RS15220 (SDC64_15220) tsaP 3201505..3202656 (+) 1152 WP_005092484.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  SDC64_RS15225 (SDC64_15225) dprA 3202668..3203798 (+) 1131 WP_320532721.1 DNA-processing protein DprA Machinery gene
  SDC64_RS15230 (SDC64_15230) - 3203836..3204405 (+) 570 WP_005085670.1 Sua5/YciO/YrdC/YwlC family protein -
  SDC64_RS15235 (SDC64_15235) - 3204781..3205701 (-) 921 WP_005085672.1 DMT family transporter -
  SDC64_RS15240 (SDC64_15240) - 3205804..3206451 (-) 648 WP_017396658.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41721.84 Da        Isoelectric Point: 9.4255

>NTDB_id=906972 SDC64_RS15220 WP_005092484.1 3201505..3202656(+) (tsaP) [Acinetobacter haemolyticus strain JS-1us]
MKKVLNGIQSFHALGLKKQLIAAAICAGLGMSVNLAHAASPNVSPPSVKVGAPHVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCSLNGKPLVGKDEGDGCAGIIRRYTGNTSTLRPQVRVEALNNSIPVIPLAHIQQWLER
TSVLPADAIAHTPYILGTADQRVLAGKGQRVYVRGNGIENGQRYGVFREGEPYTILDEHGKKQVLGVELTQVASGVAIST
EKDITTVELTDSYNGEVRRGDRVMPEQDAMLPTLFYPTDANQVTDGGKIIRVMGSIGTAAKNGVVTVDRGTADGIEIGQV
FNAYQDGETVKDPKTKENVKLPGQYVGSVMIFKSFDRISYAYVLESELPIKMGSSIKPPRLDN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=906972 SDC64_RS15220 WP_005092484.1 3201505..3202656(+) (tsaP) [Acinetobacter haemolyticus strain JS-1us]
ATGAAAAAGGTTTTAAACGGCATACAATCATTTCATGCCTTGGGGTTAAAAAAACAACTGATTGCCGCTGCAATATGTGC
AGGACTAGGCATGAGTGTCAATCTTGCACATGCTGCAAGTCCGAACGTTAGTCCACCCTCAGTAAAAGTGGGTGCACCAC
ACGTTTATGTGGTCAAAAAAGGCGATACGCTTTGGGACATTTCAGGTAAGTTTTTAAGCAAGCCTTGGCGTTGGCCTGAG
ATTTGGGCAAGCAATAAGCACGTTAAAAACCCACATTGGATCTATCCAGGCGATCGCTTATTGCTTTGTAGTTTGAATGG
CAAACCATTGGTGGGTAAAGATGAGGGAGATGGCTGTGCGGGTATTATTCGCCGTTATACAGGCAACACCTCAACATTAC
GCCCACAGGTGCGTGTCGAAGCACTCAACAATAGCATTCCAGTTATTCCATTGGCGCACATTCAACAATGGCTCGAGCGT
ACCTCGGTTCTTCCAGCTGATGCAATTGCGCATACACCTTATATCCTGGGTACAGCCGATCAACGTGTACTCGCTGGTAA
AGGTCAACGTGTTTATGTTCGCGGTAACGGTATTGAAAATGGTCAACGCTATGGCGTATTCCGTGAAGGTGAACCGTACA
CCATTCTTGATGAACATGGCAAAAAGCAGGTCCTTGGCGTTGAATTGACCCAAGTTGCTTCAGGTGTTGCTATTAGCACT
GAAAAGGATATTACCACTGTTGAGTTAACCGATAGTTATAACGGTGAAGTTCGTCGTGGTGATCGTGTCATGCCTGAACA
AGATGCCATGTTACCAACATTGTTCTACCCAACCGATGCAAATCAAGTCACTGATGGCGGTAAAATCATTCGTGTCATGG
GTTCAATTGGTACAGCCGCTAAAAATGGTGTTGTCACCGTTGATCGTGGTACAGCTGATGGAATCGAAATCGGACAAGTA
TTTAATGCTTATCAAGACGGTGAAACAGTTAAAGATCCGAAAACGAAAGAAAATGTCAAATTACCAGGACAGTATGTCGG
TAGTGTGATGATCTTTAAGAGCTTTGACCGTATCAGCTATGCGTATGTGCTTGAAAGTGAGTTACCAATAAAAATGGGCT
CAAGTATCAAACCACCTCGTTTAGATAACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A372MNT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

72.135

100

0.723