Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   SDC64_RS14730 Genome accession   NZ_CP139048
Coordinates   3092988..3093314 (-) Length   108 a.a.
NCBI ID   WP_004637627.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain JS-1us     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3087988..3098314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC64_RS14710 (SDC64_14710) - 3088298..3088906 (-) 609 WP_026070334.1 FHA domain-containing protein -
  SDC64_RS14715 (SDC64_14715) gspD 3088985..3091192 (-) 2208 WP_008942267.1 type II secretion system secretin GspD -
  SDC64_RS14720 (SDC64_14720) - 3091234..3092070 (-) 837 WP_004637629.1 type II secretion system protein N -
  SDC64_RS14725 (SDC64_14725) gspN 3092070..3092813 (-) 744 WP_026056326.1 type II secretion system protein N -
  SDC64_RS14730 (SDC64_14730) hns 3092988..3093314 (-) 327 WP_004637627.1 H-NS family nucleoid-associated regulatory protein Regulator
  SDC64_RS14735 (SDC64_14735) - 3093745..3094176 (-) 432 WP_005083921.1 thioesterase family protein -
  SDC64_RS14740 (SDC64_14740) - 3094185..3095378 (-) 1194 WP_017395055.1 hypothetical protein -
  SDC64_RS14745 (SDC64_14745) - 3095393..3096211 (-) 819 WP_320532691.1 hypothetical protein -
  SDC64_RS14750 (SDC64_14750) - 3096208..3096984 (-) 777 WP_004637621.1 uroporphyrinogen-III synthase -
  SDC64_RS14755 (SDC64_14755) hemC 3096984..3097901 (-) 918 WP_320532692.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12251.93 Da        Isoelectric Point: 5.0269

>NTDB_id=906968 SDC64_RS14730 WP_004637627.1 3092988..3093314(-) (hns) [Acinetobacter haemolyticus strain JS-1us]
MKPDISDLSVEDLKRLQAEAEALIESKKDQAIEDAYNQIIAIADGIGLSVEELLAVGEQKRKKTTRKAVEPRYRNKNNTE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=906968 SDC64_RS14730 WP_004637627.1 3092988..3093314(-) (hns) [Acinetobacter haemolyticus strain JS-1us]
ATGAAACCAGATATTAGTGATTTATCAGTTGAAGATTTAAAGCGTTTGCAAGCAGAAGCTGAAGCTTTAATTGAAAGTAA
AAAAGACCAAGCAATTGAAGATGCATATAATCAAATCATAGCAATTGCTGATGGTATTGGTTTAAGCGTTGAAGAGTTAT
TGGCTGTAGGTGAGCAAAAGCGTAAAAAGACTACGCGTAAAGCTGTAGAACCACGCTACCGCAATAAAAATAATACTGAA
GAAACTTGGACTGGTCGTGGTAAACAACCGCGTTGGTTGGTTGCTGAATTAGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852