Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   SDC64_RS14230 Genome accession   NZ_CP139048
Coordinates   2977371..2979596 (+) Length   741 a.a.
NCBI ID   WP_017395251.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain JS-1us     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2972371..2984596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC64_RS14205 (SDC64_14205) - 2972395..2973234 (+) 840 WP_004637737.1 HlyC/CorC family transporter -
  SDC64_RS14210 (SDC64_14210) lnt 2973231..2974790 (+) 1560 WP_161416703.1 apolipoprotein N-acyltransferase -
  SDC64_RS14215 (SDC64_14215) - 2974879..2975223 (-) 345 WP_004637735.1 hypothetical protein -
  SDC64_RS14220 (SDC64_14220) gspG 2975487..2976017 (-) 531 WP_320532668.1 type II secretion system major pseudopilin GspG -
  SDC64_RS14225 (SDC64_14225) gspF 2976017..2977222 (-) 1206 WP_017395250.1 type II secretion system inner membrane protein GspF -
  SDC64_RS14230 (SDC64_14230) priA 2977371..2979596 (+) 2226 WP_017395251.1 primosomal protein N' Machinery gene
  SDC64_RS14235 (SDC64_14235) - 2979637..2981454 (+) 1818 WP_017395252.1 cation:proton antiporter -
  SDC64_RS14240 (SDC64_14240) - 2981563..2982435 (+) 873 WP_017395253.1 Hsp33 family molecular chaperone HslO -
  SDC64_RS14245 (SDC64_14245) - 2982478..2982894 (-) 417 WP_017395254.1 hypothetical protein -
  SDC64_RS14250 (SDC64_14250) - 2983058..2984017 (+) 960 WP_017395255.1 DnaJ C-terminal domain-containing protein -
  SDC64_RS14255 (SDC64_14255) - 2984029..2984355 (+) 327 WP_004637727.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84358.37 Da        Isoelectric Point: 8.5604

>NTDB_id=906964 SDC64_RS14230 WP_017395251.1 2977371..2979596(+) (priA) [Acinetobacter haemolyticus strain JS-1us]
MPSENSNAILYRIRVAIPVYVYDTFDYTVSAEQYQQAQIGARVAVSFGRQNLVGIIVEKIDPNEVFTGQFKLKAITELLD
KEAILDQHVLTLMTWSAQYYQFPIGEVMQSALPTLLRQGRALDILFHLWKIVPNDDPNALLKRSPKQYEAYQILKIHPHG
TTENVLNLSGVETATLKALEKKGLVECCLEPHDFSPTPVQLAQVPLTANEDQKRAIQQILKEQHHYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDIALLHSGLNDSKRLQAWQHAQTGKASIVIGTRSAIYTPL
HHLGLIILDEEHDLSYKQQEGFRYHTRDVALYRGYLQHCPVILGSATPSIDSYHLVESGKLHLLELNQRAGVAVLPKMHV
IDLKIAKKKHGISQNLIEQIKLTLERKEQVLIFLNRRGYAPILMCESCGWQANCPHCDAHFTLHSQPYHYLHCHHCGTIN
RLPDHCPACQKQSLKTIGAGTAKLEEHLQELFPHNEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFPH
VTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGNVYLQSLRPDHPMLTTLIEHDYRTVAKQMLAERKLAML
PPYRYTVLVRVESKDREYSQHFLADIAQQLRTMAGDLVDIWGPIPAPMERKAGRYRAHMVILSADRAKLHFYLRQWWQQV
VHLPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=906964 SDC64_RS14230 WP_017395251.1 2977371..2979596(+) (priA) [Acinetobacter haemolyticus strain JS-1us]
ATGCCTAGCGAAAATTCTAACGCCATTTTGTACCGTATTCGAGTTGCCATACCTGTATATGTGTATGACACGTTTGACTA
TACGGTCAGTGCCGAACAGTATCAACAAGCACAGATTGGAGCGCGTGTTGCAGTATCGTTCGGACGACAAAATCTCGTAG
GCATCATTGTTGAAAAAATTGATCCCAATGAAGTTTTCACAGGTCAATTTAAACTGAAAGCAATTACTGAATTACTTGAT
AAAGAAGCAATATTAGATCAACACGTTTTAACTTTGATGACATGGTCTGCCCAGTACTATCAATTCCCAATTGGCGAAGT
GATGCAAAGTGCCCTCCCCACACTACTCAGACAAGGGCGTGCATTAGACATTTTATTTCATCTGTGGAAAATCGTGCCAA
ATGATGATCCGAATGCATTATTGAAACGCTCTCCAAAACAATATGAGGCGTATCAAATCTTAAAAATACATCCTCATGGC
ACCACTGAAAATGTCTTGAACCTCAGTGGTGTTGAAACTGCAACACTGAAAGCTTTAGAAAAGAAAGGGTTGGTTGAGTG
TTGTCTGGAACCACATGATTTTAGCCCCACACCTGTACAATTGGCGCAAGTACCACTAACAGCCAATGAGGATCAAAAAA
GAGCGATTCAACAAATCCTCAAAGAGCAGCATCATTACCAAGCATTTTTACTGGATGGCTTAACAGGCAGTGGCAAAACT
GAAGTTTATCTGCAAGTCATGCATGAAGTATTAAAGCAGGGTAAGCAGGTGTTGGTACTGGTTCCAGAAATCGGCCTTAC
CCCTCAAACTGTCGCTCGCTTTAAATCACGTTTTCATTGTGATATTGCTTTATTACACTCAGGGTTAAATGACTCGAAGC
GCTTACAAGCCTGGCAGCATGCACAAACAGGGAAAGCGTCCATTGTGATCGGGACCCGTTCTGCAATCTATACCCCACTT
CATCATCTTGGACTGATTATCCTTGATGAAGAGCATGATCTTTCATATAAGCAGCAAGAAGGCTTTCGTTATCATACCCG
TGATGTAGCACTCTACAGAGGATACTTACAACACTGTCCTGTGATTCTTGGATCTGCAACACCGAGTATCGATAGCTATC
ATCTGGTCGAGTCAGGCAAACTACATCTACTGGAACTCAATCAACGTGCTGGCGTCGCTGTCCTGCCTAAAATGCATGTG
ATTGATTTAAAAATTGCCAAAAAAAAACATGGTATCAGCCAAAATTTAATTGAGCAGATCAAACTCACCTTAGAACGCAA
AGAACAGGTGTTGATCTTTCTCAACCGTCGGGGCTATGCACCGATTCTGATGTGTGAAAGTTGTGGTTGGCAAGCCAATT
GCCCCCATTGTGATGCGCATTTCACCCTTCATTCTCAGCCTTATCACTATTTACATTGTCATCATTGCGGCACCATCAAT
CGCCTCCCTGATCATTGCCCAGCATGCCAGAAACAAAGTTTAAAAACGATTGGTGCTGGAACGGCAAAACTTGAAGAGCA
TTTACAAGAGTTATTTCCTCATAATGAAGTGATTCGAGTTGATCGTGACAGTACCAGCCGCGTCGGAAGTTGGCAGAAAA
TTTATGACCGTATCCAACAAAATAAACCGAGTATTTTATTGGGCACACAAATGCTTGCTAAAGGGCATCATTTTCCACAT
GTGACCTTAGTGGCTATTTTAGATATTGACGCTGGTTTACTGAGCGTGGATATCCGCGCCCCTGAACGTACCGCACAATT
AATAGTACAAGTGGCCGGACGCGCAGGACGAGGCGAACATAAAGGGAATGTCTATTTACAAAGTCTTCGCCCTGATCATC
CTATGCTCACCACATTAATTGAACATGACTATCGTACGGTTGCCAAACAAATGCTGGCTGAGCGTAAACTTGCAATGCTC
CCTCCGTATCGTTATACAGTATTGGTACGTGTGGAGTCGAAAGATCGAGAATATAGCCAGCACTTTTTGGCGGATATTGC
GCAACAACTGAGAACAATGGCTGGCGATTTAGTTGATATTTGGGGGCCAATTCCCGCACCGATGGAACGTAAAGCTGGAC
GTTATCGTGCCCACATGGTGATTTTGTCGGCCGATCGCGCCAAACTGCATTTTTATTTGCGTCAATGGTGGCAACAAGTG
GTACATTTACCTCGTCAACACCAACTCAGGCTATCCATCGATGTTGATCCACAAGAGTTTAGTTAG

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(210-371)

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

82.313

99.19

0.816