Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   SDC64_RS13715 Genome accession   NZ_CP139048
Coordinates   2880858..2881742 (-) Length   294 a.a.
NCBI ID   WP_134252898.1    Uniprot ID   A0A4P7B655
Organism   Acinetobacter haemolyticus strain JS-1us     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2875858..2886742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC64_RS13695 (SDC64_13695) - 2876464..2877543 (+) 1080 WP_017394568.1 PhoH family protein -
  SDC64_RS13700 (SDC64_13700) ybeY 2877562..2878047 (+) 486 WP_320532643.1 rRNA maturation RNase YbeY -
  SDC64_RS13705 (SDC64_13705) - 2878059..2878358 (+) 300 WP_320532644.1 antibiotic biosynthesis monooxygenase -
  SDC64_RS13710 (SDC64_13710) - 2878429..2880588 (-) 2160 WP_320532645.1 TonB-dependent siderophore receptor -
  SDC64_RS13715 (SDC64_13715) tonB2 2880858..2881742 (-) 885 WP_134252898.1 energy transducer TonB Machinery gene
  SDC64_RS13720 (SDC64_13720) - 2881977..2882660 (+) 684 WP_004637833.1 hypothetical protein -
  SDC64_RS13725 (SDC64_13725) - 2882855..2883571 (+) 717 WP_004637832.1 DUF3108 domain-containing protein -
  SDC64_RS13730 (SDC64_13730) - 2883716..2884291 (+) 576 WP_075316234.1 xanthine phosphoribosyltransferase -
  SDC64_RS13735 (SDC64_13735) - 2884337..2885110 (-) 774 WP_320532646.1 YwqG family protein -
  SDC64_RS13740 (SDC64_13740) thyA 2885282..2886124 (+) 843 WP_320532647.1 thymidylate synthase -
  SDC64_RS13745 (SDC64_13745) - 2886145..2886654 (+) 510 WP_004637828.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33519.03 Da        Isoelectric Point: 6.8580

>NTDB_id=906963 SDC64_RS13715 WP_134252898.1 2880858..2881742(-) (tonB2) [Acinetobacter haemolyticus strain JS-1us]
MWNKINFRTQMTSFWWQDPIFVGAVVIAIMVHGLVLTTQFSMPAPTDTSTKEIAVSVRPSQDKVEHADFLAQTDQQGSGE
FHQAHRMSSDMPTPMQSDATTGEHELESLETIQQKRELLFEEKVLMTVLSWQKQAEQNERKKALEELQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDAAKQQRLAGEVRLMVILNAQGGIRAIRL
IESSGHPILDEAARASVRRGAPFGAFDSSMKDISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=906963 SDC64_RS13715 WP_134252898.1 2880858..2881742(-) (tonB2) [Acinetobacter haemolyticus strain JS-1us]
ATGTGGAATAAAATAAATTTTCGTACTCAAATGACTTCCTTCTGGTGGCAAGATCCGATTTTTGTTGGAGCAGTTGTTAT
TGCAATCATGGTACATGGCCTCGTACTGACAACACAATTTTCAATGCCTGCACCTACTGATACATCAACCAAAGAAATCG
CCGTGTCTGTACGTCCAAGTCAAGATAAGGTCGAGCATGCAGATTTTTTAGCGCAAACTGATCAACAAGGATCAGGTGAA
TTTCATCAAGCACATCGTATGTCTAGTGATATGCCTACGCCAATGCAAAGTGATGCAACCACAGGAGAGCATGAGCTAGA
AAGTCTCGAAACCATACAACAGAAGCGTGAACTCCTCTTTGAGGAAAAAGTGTTAATGACAGTGTTAAGTTGGCAAAAGC
AAGCTGAACAGAATGAACGTAAGAAAGCATTAGAAGAATTACAAAGTCAATTTCAAGCCAAAGCTGCGATGGTGGCAAGT
TTAGAAGCGCAATATTTACAACGCCAACAAAATTTTAGCCGTAAGCAACGTATTAAAACGGTTGATGGGATACAAGCGAA
ACAAGATGCATCGGCAGCGTATCTCGATAAATTCCGACAAAAAGTTGAGTTGTATGGCAATCGTTATTATCCCGATGCGG
CAAAACAGCAACGCTTAGCGGGTGAAGTACGTTTAATGGTGATTTTAAATGCGCAAGGCGGTATCCGAGCCATTCGTTTA
ATTGAGAGCTCAGGACATCCGATTTTGGATGAAGCAGCTCGTGCTTCTGTTCGCCGTGGTGCACCATTTGGAGCTTTTGA
CAGCAGTATGAAAGATATTTCTGAGTTACGTATTATCCGAACATGGCGTTTTGATCCAGTGGATGCTGAATTTGAAGTGC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P7B655

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

74.83

100

0.748