Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SDC64_RS09610 Genome accession   NZ_CP139048
Coordinates   2014962..2015915 (-) Length   317 a.a.
NCBI ID   WP_008941048.1    Uniprot ID   A0AAJ2YW55
Organism   Acinetobacter haemolyticus strain JS-1us     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2009962..2020915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC64_RS09585 (SDC64_09585) - 2010010..2010801 (-) 792 WP_320532342.1 DUF4198 domain-containing protein -
  SDC64_RS09590 (SDC64_09590) - 2011032..2012252 (+) 1221 WP_320532343.1 MFS transporter -
  SDC64_RS09595 (SDC64_09595) - 2012298..2013248 (-) 951 WP_320532344.1 ABC transporter substrate-binding protein -
  SDC64_RS09600 (SDC64_09600) - 2013258..2014022 (-) 765 WP_153568902.1 ABC transporter ATP-binding protein -
  SDC64_RS09605 (SDC64_09605) - 2014013..2014969 (-) 957 WP_320532345.1 iron chelate uptake ABC transporter family permease subunit -
  SDC64_RS09610 (SDC64_09610) ceuB 2014962..2015915 (-) 954 WP_008941048.1 ABC transporter permease Machinery gene
  SDC64_RS09615 (SDC64_09615) - 2016235..2016852 (-) 618 WP_320532346.1 LysE family translocator -
  SDC64_RS09620 (SDC64_09620) - 2016943..2017917 (-) 975 WP_320532347.1 ion transporter -
  SDC64_RS09625 (SDC64_09625) - 2018187..2019533 (+) 1347 Protein_1879 DASS family sodium-coupled anion symporter -
  SDC64_RS09630 (SDC64_09630) tnpA 2019619..2020002 (+) 384 WP_004762545.1 IS66-like element accessory protein TnpA -
  SDC64_RS09635 (SDC64_09635) tnpB 2019999..2020334 (+) 336 WP_157938043.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34471.59 Da        Isoelectric Point: 9.6461

>NTDB_id=906958 SDC64_RS09610 WP_008941048.1 2014962..2015915(-) (ceuB) [Acinetobacter haemolyticus strain JS-1us]
MIKRRYLLVLLIPLALISLFVGVGDMSLAGLIAGNPQDWQLFWTSRLPRLMAIVVAGAGLSVCGLIMQSLSRNRFVSPTT
AGLYDCARLGVLISIILLPSASIFAKTGFAIIVTLIGAMTFMSILATLKHRDTVFVPLVGMIFGSIISAFTTFIALQLDL
LQNLAGWLQGDFSTILNGQYELIYLSIPVLALIYIFANRFVLAGLGEDFATNLGLNYKQTLFLGLLLVSVITGVVIVTVG
AIPFLGLIVPNLVSLYLGDHIRKTLSHTALLGALLVLLCDVFGRVVIYPYEVSVSLIMGVVGSVIFLWLLLRRYRYA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=906958 SDC64_RS09610 WP_008941048.1 2014962..2015915(-) (ceuB) [Acinetobacter haemolyticus strain JS-1us]
ATGATTAAACGGCGCTATTTACTGGTTTTACTCATACCTTTGGCATTGATTTCCTTGTTTGTTGGTGTTGGGGATATGAG
CCTTGCTGGATTGATTGCAGGCAATCCACAAGATTGGCAACTCTTTTGGACGAGTCGATTACCACGCCTGATGGCGATTG
TTGTTGCAGGTGCTGGGTTAAGTGTCTGCGGTTTAATTATGCAGTCATTAAGTCGAAATCGCTTTGTTTCACCAACCACA
GCGGGTTTATATGACTGTGCACGGCTCGGCGTTTTAATTTCGATTATTTTGCTTCCAAGTGCTTCTATTTTTGCCAAAAC
TGGATTTGCGATTATTGTCACGCTGATTGGTGCGATGACATTTATGAGTATTCTTGCCACTTTAAAGCACCGAGATACGG
TATTTGTGCCACTCGTTGGGATGATTTTTGGCAGCATTATTTCAGCATTTACGACTTTTATTGCTTTGCAACTTGATTTG
TTGCAGAACTTAGCAGGGTGGTTGCAAGGCGATTTCTCAACCATTTTGAATGGTCAATATGAATTGATTTATTTAAGTAT
TCCCGTTCTCGCCTTGATTTATATATTTGCCAATCGTTTTGTCTTGGCCGGCTTGGGTGAAGACTTTGCGACAAATCTAG
GTTTGAACTATAAACAGACACTTTTCTTAGGTTTGCTGCTGGTCTCAGTAATTACTGGTGTAGTGATTGTGACTGTCGGC
GCAATTCCTTTTCTCGGTTTAATTGTACCAAATCTAGTCAGCCTTTATTTAGGCGATCATATTCGCAAAACGCTTTCACA
TACGGCATTGCTTGGTGCATTGCTGGTCTTACTGTGTGATGTTTTTGGTCGAGTGGTGATTTATCCCTATGAGGTTTCGG
TCAGCCTGATTATGGGGGTGGTTGGTAGTGTGATTTTCCTGTGGTTATTACTCAGGAGGTATCGTTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.521

98.738

0.489