Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   SDC64_RS01700 Genome accession   NZ_CP139048
Coordinates   347248..347727 (+) Length   159 a.a.
NCBI ID   WP_320532909.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain JS-1us     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342248..352727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC64_RS01690 (SDC64_01690) pilX 342260..342994 (+) 735 WP_320532907.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene
  SDC64_RS01695 (SDC64_01695) - 343008..347264 (+) 4257 WP_320532908.1 PilC/PilY family type IV pilus protein -
  SDC64_RS01700 (SDC64_01700) comE 347248..347727 (+) 480 WP_320532909.1 type IV pilin protein Machinery gene
  SDC64_RS01705 (SDC64_01705) rpsP 347893..348150 (+) 258 WP_004641253.1 30S ribosomal protein S16 -
  SDC64_RS01710 (SDC64_01710) rimM 348169..348717 (+) 549 WP_004641251.1 ribosome maturation factor RimM -
  SDC64_RS01715 (SDC64_01715) trmD 348763..349503 (+) 741 WP_151211535.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SDC64_RS01720 (SDC64_01720) rplS 349639..350010 (+) 372 WP_004641247.1 50S ribosomal protein L19 -
  SDC64_RS01725 (SDC64_01725) - 350074..351048 (-) 975 WP_320532910.1 triacylglycerol lipase -
  SDC64_RS01730 (SDC64_01730) - 351153..352199 (-) 1047 WP_320532911.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17787.56 Da        Isoelectric Point: 9.4060

>NTDB_id=906944 SDC64_RS01700 WP_320532909.1 347248..347727(+) (comE) [Acinetobacter haemolyticus strain JS-1us]
MKVMNRRSGFTLIELMITVAIIAILAVIAIPSYDIYIRKADLSTAQQEMHKIAALLEQHRTRNFSYEGFILRDPVRNEGS
YADVDNASKTMLLLPLNASSGKQKFTLILTVDSQTWSLKAESQNPRNYSLLMTSTGLKCKTKTPANITNQSCGLASEEW

Nucleotide


Download         Length: 480 bp        

>NTDB_id=906944 SDC64_RS01700 WP_320532909.1 347248..347727(+) (comE) [Acinetobacter haemolyticus strain JS-1us]
ATGAAAGTAATGAATAGGCGATCTGGATTTACTCTGATTGAGCTGATGATCACAGTGGCGATCATTGCTATCCTGGCAGT
GATCGCCATCCCGAGTTATGACATTTATATTCGTAAAGCAGACTTATCAACAGCTCAACAAGAGATGCATAAAATTGCTG
CATTATTAGAACAACATCGAACGCGTAACTTCAGTTATGAGGGCTTCATATTAAGAGATCCTGTGCGCAATGAAGGATCC
TATGCAGATGTGGATAATGCAAGCAAGACAATGTTACTTTTACCTTTAAATGCATCGAGTGGTAAGCAAAAATTTACCTT
GATTTTAACGGTTGATTCACAGACTTGGTCACTTAAGGCTGAAAGCCAAAATCCACGTAATTACTCCTTACTTATGACCA
GTACTGGTCTAAAATGTAAGACCAAAACACCAGCCAATATCACCAATCAAAGTTGTGGTTTAGCTTCTGAAGAGTGGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(31-126)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

45.349

100

0.491