Detailed information NTG0090693

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AABJ82_RS05045
• Genome accession: NZ_AP027822
• Coordinates: 1035770..1036762 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2017.17.01CC
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1030770..1041762

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABJ82_RS05015 (VEE60_09790)	ispD	1030831..1031541 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AABJ82_RS05020 (VEE60_09800)	ispF	1031541..1032020 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AABJ82_RS05025 (VEE60_09810)	truD	1032017..1033066 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AABJ82_RS05030 (VEE60_09820)	surE	1033047..1033808 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AABJ82_RS05035 (VEE60_09830)	pcm	1033802..1034428 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AABJ82_RS05040 (VEE60_09840)	nlpD	1034613..1035707 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
AABJ82_RS05045 (VEE60_09850)	rpoS	1035770..1036762 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AABJ82_RS05050 (VEE60_09860)	ygbN	1036856..1038220 (-)	1365	WP_000104429.1	GntP family transporter	-
AABJ82_RS05055 (VEE60_09870)	ygbM	1038309..1039085 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
AABJ82_RS05060 (VEE60_09880)	ygbL	1039090..1039728 (-)	639	WP_001278994.1	aldolase	-
AABJ82_RS05065 (VEE60_09890)	otnK	1039725..1040987 (-)	1263	WP_000590404.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=90693 AABJ82_RS05045 WP_000081550.1 1035770..1036762(+) (rpoS) [Escherichia coli strain 2017.17.01CC]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=90693 AABJ82_RS05045 WP_000081550.1 1035770..1036762(+) (rpoS) [Escherichia coli strain 2017.17.01CC]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715