Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ABNG15_RS23875 Genome accession   NZ_CP158022
Coordinates   5082576..5084069 (+) Length   497 a.a.
NCBI ID   WP_003094357.1    Uniprot ID   A0A0H2ZGR9
Organism   Pseudomonas aeruginosa strain CI00795     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5077576..5089069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNG15_RS23845 (ABNG15_23845) - 5077788..5078597 (-) 810 WP_003094343.1 ABC transporter ATP-binding protein -
  ABNG15_RS23850 (ABNG15_23850) kdsD 5079011..5079991 (+) 981 WP_003094347.1 arabinose-5-phosphate isomerase KdsD -
  ABNG15_RS23855 (ABNG15_23855) - 5079991..5080530 (+) 540 WP_003112742.1 HAD family hydrolase -
  ABNG15_RS23860 (ABNG15_23860) lptC 5080539..5081111 (+) 573 WP_003094353.1 LPS export ABC transporter periplasmic protein LptC -
  ABNG15_RS23865 (ABNG15_23865) lptA 5081098..5081625 (+) 528 WP_003120916.1 lipopolysaccharide transport periplasmic protein LptA -
  ABNG15_RS23870 (ABNG15_23870) lptB 5081625..5082350 (+) 726 WP_028681196.1 LPS export ABC transporter ATP-binding protein -
  ABNG15_RS23875 (ABNG15_23875) rpoN/rpoN1 5082576..5084069 (+) 1494 WP_003094357.1 RNA polymerase factor sigma-54 Machinery gene
  ABNG15_RS23880 (ABNG15_23880) raiA 5084147..5084455 (+) 309 WP_003094359.1 ribosome-associated translation inhibitor RaiA -
  ABNG15_RS23885 (ABNG15_23885) ptsN 5084469..5084933 (+) 465 WP_003098853.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ABNG15_RS23890 (ABNG15_23890) rapZ 5084935..5085795 (+) 861 WP_003094361.1 RNase adapter RapZ -
  ABNG15_RS23895 (ABNG15_23895) - 5085825..5086097 (+) 273 WP_003094362.1 HPr family phosphocarrier protein -
  ABNG15_RS23900 (ABNG15_23900) - 5086194..5087126 (-) 933 WP_003120918.1 ZIP family metal transporter -
  ABNG15_RS23905 (ABNG15_23905) - 5087145..5087756 (-) 612 WP_031652840.1 superoxide dismutase -
  ABNG15_RS23910 (ABNG15_23910) - 5087769..5088219 (-) 451 Protein_4726 hypothetical protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 56054.22 Da        Isoelectric Point: 4.4327

>NTDB_id=906906 ABNG15_RS23875 WP_003094357.1 5082576..5084069(+) (rpoN/rpoN1) [Pseudomonas aeruginosa strain CI00795]
MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDNSDPLADGAEQAASAPQESPLQE
SATPSVESLDDDQWSERIPSELPVDTAWEDIYQTSASSLPSNDDDEWDFTARTSSGESLHSHLLWQVNLAPMSDTDRMIA
VTIIDSINNDGYLEESLEEILAAIDPELDVELDEVEVVLRRIQQLEPAGIGARNLRECLLLQLRQLPSTTPWLNEALRLV
SDYLDLLGGRDYSQLMRRMKLKEDELRQVIELIQCLHPRPGSQIESSEAEYIVPDVIVRKDNERWLVELNQEAMPRLRVN
ATYAGMVRRADSSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLDYGEEAMKPLVLHDIAEAVGMHEST
ISRVTTQKYMHTPRGIFELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENAKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLV

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=906906 ABNG15_RS23875 WP_003094357.1 5082576..5084069(+) (rpoN/rpoN1) [Pseudomonas aeruginosa strain CI00795]
ATGAAACCATCGCTAGTCCTCAAGATGGGCCAGCAGCTGACGATGACGCCGCAGCTGCAACAGGCCATACGCCTCCTCCA
GCTATCCACCCTGGACCTCCAGCAGGAAATCCAGGAAGCGCTGGAATCCAATCCCATGCTCGAACGCCAGGAAGACGGCG
ACGATTTCGACAACAGCGACCCTCTCGCCGATGGCGCCGAACAGGCGGCCAGCGCGCCCCAGGAGAGCCCTCTCCAGGAA
AGCGCCACGCCCAGCGTCGAAAGCCTCGACGACGACCAGTGGAGCGAACGCATACCCAGCGAGTTGCCGGTGGATACCGC
CTGGGAAGACATCTACCAGACCAGCGCCAGCAGCCTGCCCAGCAACGACGATGACGAATGGGACTTCACCGCGCGCACCA
GCAGCGGCGAGAGCCTGCACAGCCACCTGCTCTGGCAGGTCAACCTGGCACCGATGTCGGACACCGATCGGATGATCGCG
GTGACCATCATCGATAGCATCAACAACGATGGCTACCTCGAAGAGTCCCTCGAGGAAATCCTCGCCGCCATCGATCCGGA
ACTGGACGTCGAGCTCGACGAAGTGGAAGTCGTGCTGCGCCGCATCCAGCAACTGGAACCCGCCGGCATCGGCGCCCGCA
ACCTGCGCGAGTGCCTGCTGCTGCAACTGCGCCAGTTGCCGTCCACCACGCCCTGGCTGAACGAAGCGCTGCGCCTGGTA
TCCGACTACCTCGACCTGCTCGGCGGCCGCGACTACAGCCAATTGATGCGGCGCATGAAGCTCAAGGAAGACGAACTGCG
CCAGGTCATCGAGCTGATCCAGTGCCTGCATCCCCGGCCCGGTTCGCAGATCGAATCGAGCGAAGCCGAATACATCGTCC
CCGACGTCATCGTGCGCAAGGACAACGAGCGCTGGCTGGTCGAGCTGAACCAGGAGGCGATGCCACGCCTGCGCGTCAAC
GCCACCTACGCCGGCATGGTCCGCCGCGCCGACAGCAGCGCCGACAATACCTTCATGCGCAACCAGTTGCAGGAAGCCCG
CTGGTTCATCAAGAGCCTGCAGAGCCGCAACGAAACGCTGATGAAGGTCGCCACCCAGATCGTCGAGCACCAGCGCGGTT
TCCTCGACTACGGCGAAGAAGCCATGAAGCCGCTGGTCCTGCACGACATCGCCGAAGCGGTGGGCATGCACGAATCGACC
ATTTCGCGGGTCACCACGCAGAAATACATGCATACGCCGCGCGGCATTTTCGAGCTGAAATATTTCTTTTCAAGTCACGT
CAGTACCGCCGAAGGCGGGGAATGCTCGTCCACCGCGATCCGCGCGATCATCAAGAAACTGGTGGCCGCGGAAAATGCGA
AAAAGCCATTGAGCGACAGCAAGATCGCTGGTTTACTGGAGGCACAGGGCATTCAAGTGGCTCGCCGCACCGTCGCCAAA
TACCGCGAATCCCTGGGCATAGCCCCTTCGAGCGAGCGCAAGCGACTGGTGTGA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-495)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.654

100

0.477