Detailed information NTG0906888

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABNG15_RS14585
• Genome accession: NZ_CP158022
• Coordinates: 3120815..3121819 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain CI00795
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3115815..3126819

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNG15_RS14570 (ABNG15_14565)	-	3116296..3117305 (+)	1010	Protein_2874	TolB family protein	-
ABNG15_RS14575 (ABNG15_14570)	mutS	3117431..3119998 (+)	2568	Protein_2875	DNA mismatch repair protein MutS	-
ABNG15_RS14580 (ABNG15_14575)	fdxA	3120065..3120388 (+)	324	WP_003119354.1	ferredoxin FdxA	-
ABNG15_RS14585 (ABNG15_14580)	rpoS	3120815..3121819 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ABNG15_RS14590 (ABNG15_14585)	-	3121924..3122817 (-)	894	WP_367086860.1	peptidoglycan DD-metalloendopeptidase family protein	-
ABNG15_RS14595 (ABNG15_14590)	-	3122863..3123498 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ABNG15_RS14600 (ABNG15_14595)	surE	3123531..3124280 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ABNG15_RS14605 (ABNG15_14600)	truD	3124268..3125335 (-)	1068	WP_034001159.1	tRNA pseudouridine(13) synthase TruD	-
ABNG15_RS14610 (ABNG15_14605)	ispF	3125332..3125805 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABNG15_RS14615 (ABNG15_14610)	fghA	3125876..3126727 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=906888 ABNG15_RS14585 WP_003113871.1 3120815..3121819(-) (rpoS) [Pseudomonas aeruginosa strain CI00795]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=906888 ABNG15_RS14585 WP_003113871.1 3120815..3121819(-) (rpoS) [Pseudomonas aeruginosa strain CI00795]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653