Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ABNG15_RS12205 Genome accession   NZ_CP158022
Coordinates   2616798..2617127 (-) Length   109 a.a.
NCBI ID   WP_367086811.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CI00795     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2611798..2622127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNG15_RS12190 (ABNG15_12180) uvrB 2613185..2615197 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  ABNG15_RS12195 (ABNG15_12185) - 2615385..2616581 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  ABNG15_RS12205 (ABNG15_12195) comEA/comE1 2616798..2617127 (-) 330 WP_367086811.1 ComEA family DNA-binding protein Machinery gene
  ABNG15_RS12210 (ABNG15_12200) - 2617318..2619315 (-) 1998 WP_009313767.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  ABNG15_RS12215 (ABNG15_12205) - 2619446..2620471 (-) 1026 WP_004350972.1 glycosyltransferase family 4 protein -
  ABNG15_RS12220 (ABNG15_12210) - 2620468..2621427 (-) 960 WP_367086812.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11323.25 Da        Isoelectric Point: 7.1652

>NTDB_id=906884 ABNG15_RS12205 WP_367086811.1 2616798..2617127(-) (comEA/comE1) [Pseudomonas aeruginosa strain CI00795]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRAQIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=906884 ABNG15_RS12205 WP_367086811.1 2616798..2617127(-) (comEA/comE1) [Pseudomonas aeruginosa strain CI00795]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCAGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385