Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   SH576_RS10790 Genome accession   NZ_CP139036
Coordinates   2291191..2291826 (+) Length   211 a.a.
NCBI ID   WP_377662821.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain MAS152     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2286191..2296826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH576_RS10775 (SH576_10780) - 2286897..2288141 (+) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -
  SH576_RS10780 (SH576_10785) - 2288229..2288762 (-) 534 WP_033990447.1 DUF2062 domain-containing protein -
  SH576_RS10785 (SH576_10790) comA 2288893..2291118 (+) 2226 WP_058147062.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SH576_RS10790 (SH576_10795) exbB 2291191..2291826 (+) 636 WP_377662821.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  SH576_RS10795 (SH576_10800) - 2291823..2292263 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  SH576_RS10800 (SH576_10805) lpxK 2292263..2293261 (+) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  SH576_RS10805 (SH576_10810) - 2293299..2293484 (+) 186 WP_003091157.1 Trm112 family protein -
  SH576_RS10810 (SH576_10815) kdsB 2293484..2294248 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SH576_RS10815 (SH576_10820) - 2294248..2294712 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  SH576_RS10820 (SH576_10825) murB 2294709..2295728 (+) 1020 WP_003124431.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22900.10 Da        Isoelectric Point: 6.7278

>NTDB_id=906880 SH576_RS10790 WP_377662821.1 2291191..2291826(+) (exbB) [Pseudomonas aeruginosa strain MAS152]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGIPKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=906880 SH576_RS10790 WP_377662821.1 2291191..2291826(+) (exbB) [Pseudomonas aeruginosa strain MAS152]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATTGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCCCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806