Detailed information NTG0906802

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABNW24_RS14225
• Genome accession: NZ_CP157958
• Coordinates: 2896867..2897859 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 800
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2891867..2902859

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNW24_RS14205 (ABNW24_14205)	otnK	2892642..2893904 (+)	1263	WP_000590405.1	3-oxo-tetronate kinase	-
ABNW24_RS14210 (ABNW24_14210)	ygbL	2893901..2894539 (+)	639	WP_001278994.1	aldolase	-
ABNW24_RS14215 (ABNW24_14215)	ygbM	2894544..2895320 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ABNW24_RS14220 (ABNW24_14220)	ygbN	2895409..2896773 (+)	1365	WP_049254918.1	GntP family transporter	-
ABNW24_RS14225 (ABNW24_14225)	rpoS	2896867..2897859 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABNW24_RS14230 (ABNW24_14230)	nlpD	2897922..2899016 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ABNW24_RS14235 (ABNW24_14235)	pcm	2899201..2899827 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABNW24_RS14240 (ABNW24_14240)	surE	2899821..2900582 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABNW24_RS14245 (ABNW24_14245)	truD	2900563..2901612 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ABNW24_RS14250 (ABNW24_14250)	ispF	2901609..2902088 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABNW24_RS14255 (ABNW24_14255)	ispD	2902088..2902798 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=906802 ABNW24_RS14225 WP_000081550.1 2896867..2897859(-) (rpoS) [Escherichia coli strain 800]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=906802 ABNW24_RS14225 WP_000081550.1 2896867..2897859(-) (rpoS) [Escherichia coli strain 800]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715