Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ABNW24_RS10775 Genome accession   NZ_CP157958
Coordinates   2148611..2150038 (+) Length   475 a.a.
NCBI ID   WP_000980567.1    Uniprot ID   -
Organism   Escherichia coli strain 800     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2143611..2155038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNW24_RS10735 (ABNW24_10735) yeeW 2143795..2143989 (+) 195 WP_000988600.1 DUF5983 family protein -
  ABNW24_RS10740 (ABNW24_10740) - 2144035..2144115 (+) 81 Protein_2101 hypothetical protein -
  ABNW24_RS10745 (ABNW24_10745) - 2144404..2144550 (-) 147 Protein_2102 transposase domain-containing protein -
  ABNW24_RS10750 (ABNW24_10750) - 2144604..2144786 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  ABNW24_RS10755 (ABNW24_10755) tmaR 2144887..2145216 (-) 330 WP_000450409.1 DUF496 family protein -
  ABNW24_RS10760 (ABNW24_10760) yeeA 2145388..2146446 (-) 1059 WP_001200905.1 FUSC family protein -
  ABNW24_RS10765 (ABNW24_10765) sbmC 2146644..2147117 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  ABNW24_RS10770 (ABNW24_10770) dacD 2147236..2148402 (-) 1167 WP_001310935.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  ABNW24_RS10775 (ABNW24_10775) sbcB 2148611..2150038 (+) 1428 WP_000980567.1 exodeoxyribonuclease I Machinery gene
  ABNW24_RS10780 (ABNW24_10780) tsuB 2150081..2150308 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  ABNW24_RS10785 (ABNW24_10785) tsuA 2150322..2151380 (-) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  ABNW24_RS10790 (ABNW24_10790) plaP 2151559..2152917 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  ABNW24_RS10795 (ABNW24_10795) yoeI 2152907..2152969 (-) 63 WP_010723108.1 membrane protein YoeI -
  ABNW24_RS10800 (ABNW24_10800) yeeY 2153184..2154113 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  ABNW24_RS10805 (ABNW24_10805) yeeZ 2154159..2154983 (-) 825 WP_000754749.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54503.77 Da        Isoelectric Point: 5.4720

>NTDB_id=906789 ABNW24_RS10775 WP_000980567.1 2148611..2150038(+) (sbcB) [Escherichia coli strain 800]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQIFTSEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=906789 ABNW24_RS10775 WP_000980567.1 2148611..2150038(+) (sbcB) [Escherichia coli strain 800]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAACAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGATCTTCACGTCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581