Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABNW24_RS05100 Genome accession   NZ_CP157958
Coordinates   1050632..1051261 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 800     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1045632..1056261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNW24_RS05080 (ABNW24_05080) ycbZ 1046033..1047793 (-) 1761 WP_000152888.1 Lon protease family protein -
  ABNW24_RS05085 (ABNW24_05085) matP 1047979..1048431 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABNW24_RS05090 (ABNW24_05090) ompA 1048507..1049547 (-) 1041 WP_001400178.1 porin OmpA -
  ABNW24_RS05095 (ABNW24_05095) sulA 1049904..1050413 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABNW24_RS05100 (ABNW24_05100) sxy/tfoX 1050632..1051261 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABNW24_RS05105 (ABNW24_05105) yccS 1051224..1053386 (-) 2163 WP_000875058.1 YccS family putative transporter -
  ABNW24_RS05110 (ABNW24_05110) yccF 1053396..1053842 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ABNW24_RS05115 (ABNW24_05115) helD 1053965..1056019 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=906776 ABNW24_RS05100 WP_000839153.1 1050632..1051261(+) (sxy/tfoX) [Escherichia coli strain 800]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=906776 ABNW24_RS05100 WP_000839153.1 1050632..1051261(+) (sxy/tfoX) [Escherichia coli strain 800]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1