Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ABNW15_RS23170 Genome accession   NZ_CP157955
Coordinates   4850782..4851807 (+) Length   341 a.a.
NCBI ID   WP_000644904.1    Uniprot ID   P0ACN8
Organism   Escherichia coli strain B1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4845782..4856807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNW15_RS23160 (ABNW15_23150) rpmE 4848013..4848225 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  ABNW15_RS23165 (ABNW15_23155) priA 4848428..4850626 (+) 2199 WP_001330197.1 primosomal protein N' Machinery gene
  ABNW15_RS23170 (ABNW15_23160) cytR 4850782..4851807 (+) 1026 WP_000644904.1 DNA-binding transcriptional regulator CytR Regulator
  ABNW15_RS23175 (ABNW15_23165) ftsN 4851899..4852858 (+) 960 WP_000068834.1 cell division protein FtsN -
  ABNW15_RS23180 (ABNW15_23170) hslV 4852951..4853481 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  ABNW15_RS23185 (ABNW15_23175) hslU 4853491..4854822 (+) 1332 WP_001293344.1 HslU--HslV peptidase ATPase subunit -
  ABNW15_RS23190 (ABNW15_23180) menA 4854889..4855815 (+) 927 WP_001305044.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ABNW15_RS23195 (ABNW15_23185) rraA 4855908..4856393 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  ABNW15_RS23200 (ABNW15_23190) zapB 4856478..4856723 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37819.78 Da        Isoelectric Point: 6.3842

>NTDB_id=906752 ABNW15_RS23170 WP_000644904.1 4850782..4851807(+) (cytR) [Escherichia coli strain B1]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=906752 ABNW15_RS23170 WP_000644904.1 4850782..4851807(+) (cytR) [Escherichia coli strain B1]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTACCTACCGTTCATATAGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGTGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

64.179

98.24

0.63
  cytR Vibrio cholerae C6706

65.443

95.894

0.628