Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   SJY35_RS01020 Genome accession   NZ_CP139001
Coordinates   223665..224735 (+) Length   356 a.a.
NCBI ID   WP_396587960.1    Uniprot ID   -
Organism   Bermanella sp. R86510     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 218665..229735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJY35_RS01000 - 218698..219801 (+) 1104 WP_396587956.1 chalcone isomerase family protein -
  SJY35_RS01005 - 219921..221837 (+) 1917 WP_396587957.1 diguanylate cyclase domain-containing protein -
  SJY35_RS01010 rsmD 221857..222420 (-) 564 WP_396587958.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SJY35_RS01015 - 222427..223563 (-) 1137 WP_396587959.1 hypothetical protein -
  SJY35_RS01020 pilA 223665..224735 (+) 1071 WP_396587960.1 signal recognition particle-docking protein FtsY Machinery gene
  SJY35_RS01025 ftsE 224747..225457 (+) 711 WP_396587961.1 cell division ATP-binding protein FtsE -
  SJY35_RS01030 ftsX 225450..226418 (+) 969 WP_396587962.1 permease-like cell division protein FtsX -
  SJY35_RS01035 rpoH 226610..227476 (+) 867 WP_396587963.1 RNA polymerase sigma factor RpoH -
  SJY35_RS01040 - 227518..228633 (-) 1116 WP_396587964.1 GGDEF domain-containing protein -
  SJY35_RS01045 - 228714..229706 (-) 993 WP_396587965.1 catalase family peroxidase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38320.50 Da        Isoelectric Point: 4.6992

>NTDB_id=906676 SJY35_RS01020 WP_396587960.1 223665..224735(+) (pilA) [Bermanella sp. R86510]
MFGWGKSKNKPDSAKAEKLDAEKPESASPATAEETTDQTPEIAPQQESQQGFFARIKAGLSRTRSGLTEGLGDLLLGKKE
IDDDLLEEIETQLLMADIGVTATQSIIADLTERTGRKELKDSDALLDALKLHLKELLSPCYAPLEVDSSKQPYVILMVGV
NGVGKTTTIGKMAKRFQAQGKSVMLAAGDTFRAAAVEQLQTWGERNNVPVVAQHTGADSASVIYDAVQSAQSKGTDVVIA
DTAGRLQNKANLMQELEKVVRVMRKLDDSAPHEVMLVLDAGTGQNALSQAKIFQQAVGVTGLTLSKLDGTAKGGVIFAIA
KELGLPVRYIGVGEQIDDLRPFDHEEFIEALFARDE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=906676 SJY35_RS01020 WP_396587960.1 223665..224735(+) (pilA) [Bermanella sp. R86510]
ATGTTCGGTTGGGGAAAATCCAAAAACAAACCCGATTCAGCTAAGGCCGAAAAGCTGGACGCAGAAAAGCCAGAATCGGC
ATCGCCCGCAACAGCGGAAGAGACGACTGATCAAACACCTGAAATAGCACCACAACAGGAGTCTCAACAAGGCTTCTTTG
CGCGTATAAAAGCTGGTTTAAGCCGCACTCGATCGGGTCTTACCGAAGGCTTGGGTGATCTTCTTTTAGGTAAAAAAGAA
ATAGACGACGACCTATTAGAAGAAATCGAAACCCAATTATTAATGGCCGATATTGGCGTAACCGCCACGCAATCTATCAT
CGCCGATTTAACAGAGCGTACTGGCCGTAAAGAACTTAAAGATAGCGATGCCTTGCTTGATGCCTTAAAACTCCATTTAA
AAGAGCTTCTCAGCCCGTGTTATGCACCGTTAGAAGTCGATAGCAGTAAACAGCCCTATGTCATATTAATGGTAGGCGTA
AATGGTGTGGGCAAAACCACCACCATTGGCAAAATGGCGAAACGCTTTCAGGCCCAAGGCAAGTCCGTCATGCTCGCCGC
TGGCGATACATTCCGCGCCGCCGCCGTAGAACAATTACAAACTTGGGGCGAACGCAATAACGTGCCCGTGGTAGCTCAAC
ATACGGGGGCTGATAGTGCATCGGTCATATACGATGCTGTGCAATCGGCCCAATCGAAGGGTACCGATGTGGTCATAGCC
GATACCGCTGGGCGCTTGCAAAACAAAGCTAACTTAATGCAAGAGCTCGAGAAAGTTGTACGTGTGATGCGTAAACTAGA
CGACTCGGCACCCCACGAGGTAATGTTGGTATTGGACGCCGGTACTGGTCAAAACGCCCTTAGCCAAGCGAAAATCTTTC
AGCAAGCAGTGGGCGTAACTGGCTTAACCTTAAGCAAACTCGATGGCACTGCAAAAGGCGGGGTTATTTTTGCCATTGCC
AAAGAGCTGGGTCTACCGGTTCGCTATATTGGCGTGGGCGAACAAATTGACGACTTACGCCCGTTTGATCATGAAGAATT
TATTGAGGCGCTGTTTGCCCGCGACGAATAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(153-352)

SRP54-type protein, helical bundle domain (SRP54_N)

(67-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.381

94.382

0.494