Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   ABHM94_RS03350 Genome accession   NZ_CP157939
Coordinates   598793..599176 (+) Length   127 a.a.
NCBI ID   WP_002856861.1    Uniprot ID   -
Organism   Campylobacter jejuni strain P8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 593793..604176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHM94_RS03330 (ABHM94_03330) - 593890..595824 (-) 1935 WP_002919846.1 ribonuclease R family protein -
  ABHM94_RS03335 (ABHM94_03335) ilvC 595943..596965 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  ABHM94_RS03340 (ABHM94_03340) - 596969..598033 (+) 1065 WP_071615818.1 divergent polysaccharide deacetylase family protein -
  ABHM94_RS03345 (ABHM94_03345) dprA 598023..598796 (+) 774 WP_002919848.1 DNA-processing protein DprA Machinery gene
  ABHM94_RS03350 (ABHM94_03350) dprB 598793..599176 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  ABHM94_RS03355 (ABHM94_03355) - 599205..600044 (+) 840 WP_079263941.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ABHM94_RS03360 (ABHM94_03360) msrA 600220..600717 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ABHM94_RS03365 (ABHM94_03365) ppa 600758..601276 (-) 519 WP_002855031.1 inorganic diphosphatase -
  ABHM94_RS03370 (ABHM94_03370) adk 601286..601864 (-) 579 WP_002855137.1 adenylate kinase -
  ABHM94_RS03375 (ABHM94_03375) aspS 601861..603612 (-) 1752 WP_002919852.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14074.57 Da        Isoelectric Point: 9.5433

>NTDB_id=906640 ABHM94_RS03350 WP_002856861.1 598793..599176(+) (dprB) [Campylobacter jejuni strain P8]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=906640 ABHM94_RS03350 WP_002856861.1 598793..599176(+) (dprB) [Campylobacter jejuni strain P8]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCTGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449