Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   ABHM94_RS01905 Genome accession   NZ_CP157939
Coordinates   324684..327506 (-) Length   940 a.a.
NCBI ID   WP_002894536.1    Uniprot ID   -
Organism   Campylobacter jejuni strain P8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 319684..332506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHM94_RS01875 (ABHM94_01875) - 320062..321423 (+) 1362 WP_002854208.1 MFS transporter -
  ABHM94_RS01880 (ABHM94_01880) - 321420..322427 (+) 1008 WP_002894534.1 nucleoside hydrolase -
  ABHM94_RS01885 (ABHM94_01885) - 322383..322826 (-) 444 WP_002858712.1 YqaA family protein -
  ABHM94_RS01890 (ABHM94_01890) - 322826..323422 (-) 597 WP_002860300.1 hypothetical protein -
  ABHM94_RS01895 (ABHM94_01895) - 323403..324110 (-) 708 WP_002894535.1 hypothetical protein -
  ABHM94_RS01900 (ABHM94_01900) - 324130..324682 (-) 553 Protein_333 hypothetical protein -
  ABHM94_RS01905 (ABHM94_01905) uvrA 324684..327506 (-) 2823 WP_002894536.1 excinuclease ABC subunit UvrA Machinery gene
  ABHM94_RS01910 (ABHM94_01910) - 327579..328364 (-) 786 WP_002857375.1 sulfite exporter TauE/SafE family protein -
  ABHM94_RS01915 (ABHM94_01915) - 328486..328575 (+) 90 WP_042635777.1 hypothetical protein -
  ABHM94_RS01920 (ABHM94_01920) trpE 328776..330026 (+) 1251 WP_002868675.1 anthranilate synthase component I family protein -
  ABHM94_RS01925 (ABHM94_01925) trpD 330023..331624 (+) 1602 WP_002894537.1 anthranilate phosphoribosyltransferase -
  ABHM94_RS01930 (ABHM94_01930) trpF 331611..332210 (+) 600 WP_002860294.1 N-(5'-phosphoribosyl)anthranilate isomerase -

Sequence

Protein


Download         Length: 940 a.a.        Molecular weight: 105387.80 Da        Isoelectric Point: 8.7868

>NTDB_id=906636 ABHM94_RS01905 WP_002894536.1 324684..327506(-) (uvrA) [Campylobacter jejuni strain P8]
MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFGTLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGL
TPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLYARVGIQHCHQCGQKISSMSASDIVSEILKFPKGAKIIIYAPLIREKK
GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRLASDIEKGLQESFGEIEIEVLNH
EEINLNKHYHFSEHSACFDCKISFVPLEPLSFSFNSPKGACEACDGLGIRYTLDMKKIIDENLSLENGSVKIMYGFNKSY
YYKFLIAFCEQNEIPIKIPFMQLNEVQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEYMSEKICKD
CGGHRLKPESLAVKVAKKGLGEILDMSIEDSTAFFADEKNFSYLSEQQKLISKPILKEINERLFFLYDVGLGYLSLGRDA
RTISGGEAQRIRIASQIGSGLSGVMYVLDEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKA
GKFGGEVVFSGTYKELLKSKSETALYMNGKKQISQLQNRTQKEWLELKNVNINNIQDLSVKFPLQNLVAITGVSGSGKSS
LILQTLLPFAQEELNRAKKVKKLGGIQIEGLEKLDKVIYLDQSPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKA
GRFSFNVKGGRCEKCSGDGEIKIEMHFLPDVMVVCDTCGGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKIKQ
KLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLHFEDVNKLILVLQHLVDLKNSVFVI
EHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVEKVAKEHKKTKSYTGYYLDLELKNARS

Nucleotide


Download         Length: 2823 bp        

>NTDB_id=906636 ABHM94_RS01905 WP_002894536.1 324684..327506(-) (uvrA) [Campylobacter jejuni strain P8]
ATGAACGATACCATAAAAATCATTGGTGCAAGAGAAAATAACCTAAAAAATATCCACCTTGAAATTCCCAAAAACAAACT
CATTGTTTTTACAGGACTGAGTGGGAGTGGAAAATCAACCCTTGCTTTTGGCACTCTTTATGCCGAGGGACAACGCCGTT
ACATAGAAAGTTTAAGTGCTTATGCCAGACAATTTTTAGATAAGGTGGGCAAACCTGATGTCGATAAAATCGAAGGTTTA
ACTCCAGCCATTGCTATAGATCAAAAAACCACTTCTAAAAATCCACGCTCGACTGTGGGAACCATCACTGAAATTTATGA
TTATCTAAGACTTTTATATGCAAGAGTGGGTATTCAACATTGTCATCAATGCGGACAAAAAATCTCATCTATGAGTGCAA
GTGATATAGTCAGTGAAATTTTAAAATTTCCAAAAGGTGCAAAAATCATCATCTACGCCCCACTCATACGAGAAAAAAAA
GGAACTTATGCAGATTTGCTTGAAAATTTACGCAACAAAGGCTATGTAAGAGCTCAAATTGATGGAGTTTTGGTAAGACT
TGATGAAGAAATTGAACTAGCCAAAACCAAAAAACACACCATTAAACTTGTCATAGATAGACTTGAAATTCAAGAAGATT
TACTTTCTCGTCTTGCAAGCGATATAGAAAAAGGTTTACAGGAAAGCTTTGGAGAAATAGAAATAGAAGTTTTAAATCAT
GAGGAAATAAACCTTAATAAACACTATCATTTTAGCGAGCATTCAGCTTGTTTTGATTGTAAAATTTCCTTTGTTCCACT
CGAGCCTTTAAGCTTTTCTTTTAATTCTCCAAAAGGAGCATGTGAAGCTTGCGATGGACTTGGAATTCGTTATACTTTAG
ATATGAAAAAAATCATCGATGAAAATTTAAGTCTCGAAAACGGTTCTGTTAAAATCATGTATGGTTTTAATAAAAGTTAT
TATTATAAATTCCTAATCGCCTTTTGCGAACAAAATGAAATTCCTATCAAAATACCTTTTATGCAATTAAACGAAGTACA
AAAACGTCTTGTATTGTATGGTAATGCCAAAACTATAGAATTTCTTTGGAAAAGAAATCGCCTAAAACGCACTTTTGAAG
GCGTGGTTAAAATGGCTTATGAAATGCTAAAAGATGAAAAAGATTTAGCCGAATATATGAGTGAAAAAATTTGTAAAGAC
TGCGGTGGGCATCGTTTAAAACCCGAAAGTTTAGCCGTGAAAGTAGCCAAAAAAGGCTTGGGTGAAATTTTAGATATGAG
CATAGAAGATAGCACGGCCTTTTTTGCAGATGAGAAAAATTTTTCTTATTTAAGCGAGCAACAAAAACTTATTTCTAAAC
CTATCCTAAAAGAAATCAACGAAAGATTGTTTTTCTTGTATGATGTGGGGCTAGGTTATCTTTCTTTAGGGCGCGATGCA
AGAACGATTAGTGGGGGTGAAGCACAAAGAATCCGCATAGCTTCACAAATTGGCAGTGGTTTAAGCGGAGTGATGTATGT
CTTAGATGAGCCTAGCATAGGACTTCATGAAAGAGATACTGCAAAACTGATTAAAACTTTAAGAAATTTACAACAAAAGG
GCAATACCCTAATTGTCGTAGAGCATGATAAAATGACCATAGAAGAAGCAGATTTTATTGTAGATATTGGTCCAAAAGCA
GGAAAATTTGGGGGTGAGGTTGTATTTAGTGGAACTTATAAAGAACTTTTAAAAAGCAAAAGCGAAACTGCACTTTATAT
GAATGGTAAAAAACAAATTTCACAACTTCAAAACAGAACACAGAAAGAATGGCTTGAGCTTAAAAATGTAAATATTAACA
ATATCCAAGATTTAAGCGTAAAATTTCCTTTGCAAAATTTAGTCGCTATAACAGGAGTTTCAGGTTCTGGAAAAAGCTCT
TTGATACTTCAAACCCTACTTCCTTTTGCACAAGAGGAATTAAACCGTGCGAAAAAAGTTAAAAAACTTGGCGGAATACA
AATAGAAGGACTTGAAAAACTTGATAAAGTCATTTATCTTGATCAAAGCCCAATTGGGCGCACACCACGTTCAAATCCTG
CCACCTATACAGGTGCTATGGATGAAATCAGAAATCTTTTTGCCGCCACTAAAGAAGCCAAAATGCGTGGTTATAAAGCC
GGACGCTTTTCTTTTAATGTCAAGGGTGGAAGATGTGAGAAATGTAGCGGAGATGGAGAAATCAAAATAGAAATGCATTT
TTTACCTGATGTTATGGTAGTTTGTGATACTTGCGGGGGCAAACGCTACAATGATGCCACGCTAGAAATCAAATATAAAG
GCAAAAATATCAGTGAAATTTTAAATATGAGTGTTTTAGAAGCGAGTGAATTTTTTACAGCCGTTCCTAAAATCAAACAA
AAATTAGATACTCTAGTAAAAGTGGGTTTAGATTATCTAACCCTAGGACAAAATGCCACCACCTTAAGTGGAGGTGAAGC
ACAAAGAATCAAACTTGCTAAAGAACTAAGCCGTAGCGATACAGGAAAAACGCTTTATATACTTGATGAACCTACAACAG
GACTGCATTTTGAAGATGTCAATAAACTCATCTTAGTTTTACAACATTTGGTTGATCTTAAAAATTCTGTTTTTGTGATA
GAACATAATTTAGATGTGATTAAAAATGCTGATTATATCATCGATATGGGGCCTGAAGGCGGAGTTAAAGGTGGAAAAGT
TATAAGCACAGGAAGCGTGGAAAAAGTCGCTAAAGAGCATAAGAAAACAAAATCCTATACAGGATATTATTTAGATCTAG
AGCTTAAAAACGCAAGGAGTTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(132-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-386)

ABC transporter (ABC_tran)

(616-852)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

51.84

100

0.524
  uvrA Streptococcus pneumoniae TIGR4

51.84

100

0.524
  uvrA Streptococcus pneumoniae D39

51.84

100

0.524