Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   SIB51_RS15535 Genome accession   NZ_CP138987
Coordinates   3376738..3377802 (+) Length   354 a.a.
NCBI ID   WP_058090082.1    Uniprot ID   A0A142FTW4
Organism   Marinobacter sp. MIT0238     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3371738..3382802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB51_RS15520 rpmE 3372175..3372396 (+) 222 WP_058090079.1 50S ribosomal protein L31 -
  SIB51_RS15525 - 3372613..3373878 (+) 1266 WP_058090080.1 malic enzyme-like NAD(P)-binding protein -
  SIB51_RS15530 - 3373971..3376499 (-) 2529 WP_058090081.1 penicillin-binding protein 1A -
  SIB51_RS15535 pilM 3376738..3377802 (+) 1065 WP_058090082.1 pilus assembly protein PilM Machinery gene
  SIB51_RS15540 - 3377802..3378365 (+) 564 WP_058090083.1 PilN domain-containing protein -
  SIB51_RS15545 - 3378365..3378976 (+) 612 WP_058090084.1 type 4a pilus biogenesis protein PilO -
  SIB51_RS15550 - 3378979..3379521 (+) 543 WP_058090085.1 pilus assembly protein PilP -
  SIB51_RS15555 pilQ 3379540..3381552 (+) 2013 Protein_3072 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38062.18 Da        Isoelectric Point: 4.1938

>NTDB_id=906557 SIB51_RS15535 WP_058090082.1 3376738..3377802(+) (pilM) [Marinobacter sp. MIT0238]
MFGLLGKKSSAVLGVDVSSSSVKLLELSRHGDRYKVESYAVEPLPANAVVEKNITDVEAVGEVLKRVASKSRTGVKQVAV
AVSGSAVITKVIQMDGGLNEFEMEDQITLEADQYIPYPLDEVAIDFEVQGPSESNPDQVDVLLAACRKENVDIREDALEI
AGLTTKIVDVEAYALERAYKLIEPQLESQGEELVVAIVDIGATMTTLSVLAEGKTVYTREQIFGGKQLTEEIQRRYGLSL
EEAGLAKKQGGLPDDYDPEVLTPFREAVVQQVARALQFFFGASQYNAVDYVVLAGGTASIQGLTEMVEEKTGTPTLVANP
FADMAVGSRVNASALSNDAPSLMIACGLAMRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=906557 SIB51_RS15535 WP_058090082.1 3376738..3377802(+) (pilM) [Marinobacter sp. MIT0238]
GTGTTCGGATTGCTAGGAAAAAAATCCAGTGCAGTGCTGGGGGTGGATGTCAGCTCCAGCTCGGTCAAACTTCTGGAACT
GTCAAGGCATGGCGACCGTTACAAGGTTGAAAGCTATGCGGTTGAGCCGTTGCCGGCCAACGCAGTTGTCGAGAAAAACA
TCACTGATGTAGAAGCGGTGGGTGAGGTGCTCAAGCGAGTCGCCTCCAAATCCCGTACCGGCGTCAAGCAGGTGGCCGTG
GCCGTATCAGGTTCTGCGGTTATCACCAAGGTTATCCAAATGGATGGCGGCCTCAACGAATTCGAGATGGAAGACCAGAT
CACCCTTGAGGCCGATCAGTACATCCCGTATCCGTTGGATGAAGTAGCCATCGACTTTGAGGTGCAGGGGCCGTCTGAAT
CGAATCCGGACCAGGTCGACGTGTTGCTGGCCGCGTGCAGAAAAGAGAACGTGGATATCCGTGAGGACGCTCTCGAGATT
GCCGGCCTGACCACCAAGATTGTGGATGTCGAAGCCTACGCGCTGGAAAGGGCATACAAGTTGATTGAGCCCCAGCTTGA
ATCCCAGGGCGAAGAGCTGGTGGTTGCCATCGTCGATATCGGCGCAACCATGACCACCCTGAGCGTGCTGGCCGAGGGCA
AGACGGTTTATACCCGTGAGCAGATTTTCGGTGGTAAGCAACTGACTGAGGAGATTCAGCGTCGCTACGGCCTGTCCCTT
GAGGAGGCCGGTCTCGCCAAGAAACAGGGTGGGCTTCCGGACGATTATGATCCGGAAGTGTTGACACCTTTCCGTGAGGC
AGTCGTGCAGCAAGTCGCGCGCGCCCTCCAGTTCTTCTTTGGTGCCAGCCAGTACAATGCCGTTGATTACGTCGTTCTTG
CCGGCGGCACGGCATCCATTCAGGGCCTGACCGAGATGGTCGAAGAGAAAACCGGTACGCCAACCCTGGTTGCGAATCCA
TTCGCCGACATGGCCGTGGGTTCCAGAGTGAATGCATCAGCCCTGAGCAATGATGCTCCATCGTTGATGATTGCCTGCGG
CCTGGCAATGAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142FTW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

53.39

100

0.534
  comM Acinetobacter nosocomialis M2

53.39

100

0.534
  comM Acinetobacter baylyi ADP1

51.412

100

0.514
  pilM Legionella pneumophila strain ERS1305867

45.48

100

0.455