Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   SIC12_RS14180 Genome accession   NZ_CP138985
Coordinates   3058057..3058449 (+) Length   130 a.a.
NCBI ID   WP_058090780.1    Uniprot ID   A0A142FS36
Organism   Marinobacter sp. MIT1358     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3053057..3063449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIC12_RS14150 - 3053337..3054356 (-) 1020 WP_058090774.1 aspartate carbamoyltransferase catalytic subunit -
  SIC12_RS14155 pyrR 3054383..3054892 (-) 510 WP_058090775.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  SIC12_RS14160 ruvX 3054912..3055343 (-) 432 WP_058090776.1 Holliday junction resolvase RuvX -
  SIC12_RS14165 - 3055336..3055902 (-) 567 WP_058090777.1 YqgE/AlgH family protein -
  SIC12_RS14170 - 3055899..3056765 (-) 867 WP_058090778.1 energy transducer TonB -
  SIC12_RS14175 gshB 3056812..3057765 (-) 954 WP_058090779.1 glutathione synthase -
  SIC12_RS14180 pilG 3058057..3058449 (+) 393 WP_058090780.1 twitching motility response regulator PilG Regulator
  SIC12_RS14185 pilH 3058482..3058844 (+) 363 WP_011787171.1 twitching motility response regulator PilH -
  SIC12_RS14190 - 3058865..3059410 (+) 546 WP_058090781.1 chemotaxis protein CheW -
  SIC12_RS14195 - 3059505..3061580 (+) 2076 WP_058090782.1 methyl-accepting chemotaxis protein -
  SIC12_RS14200 - 3061608..3062507 (+) 900 WP_058090783.1 CheR family methyltransferase -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14608.90 Da        Isoelectric Point: 6.3282

>NTDB_id=906503 SIC12_RS14180 WP_058090780.1 3058057..3058449(+) (pilG) [Marinobacter sp. MIT1358]
MDDNFENLKIMVIDDSKTIRRTAETLLKKVGCEVITATDGFDALAKIADSQPDIIFVDIMMPRLDGYQTCALIKNNSSFK
KTPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKDELLNTIRQYIPQAQQ

Nucleotide


Download         Length: 393 bp        

>NTDB_id=906503 SIC12_RS14180 WP_058090780.1 3058057..3058449(+) (pilG) [Marinobacter sp. MIT1358]
ATGGATGACAACTTCGAGAATCTGAAGATTATGGTGATTGACGACAGCAAAACCATTCGTCGCACCGCAGAAACCCTTCT
CAAAAAGGTCGGTTGTGAGGTCATCACCGCCACTGACGGCTTTGACGCTCTGGCCAAGATTGCCGATTCCCAGCCGGACA
TCATTTTTGTTGATATCATGATGCCCCGACTGGATGGCTACCAGACCTGCGCACTTATCAAGAACAATTCCTCTTTCAAA
AAGACGCCGGTTATCATGCTCTCGAGCAAGGACGGCCTTTTCGACAAGGCAAAAGGTCGCATCGTTGGCTCGGACCAGTA
TCTGACCAAACCGTTCAGCAAGGATGAGCTGCTCAATACTATTCGCCAGTACATTCCACAGGCGCAACAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142FS36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

77.6

96.154

0.746
  vicR Streptococcus mutans UA159

40.984

93.846

0.385
  micA Streptococcus pneumoniae Cp1015

40.496

93.077

0.377
  pilH Synechocystis sp. PCC 6803

40.517

89.231

0.362