Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SIB93_RS09580 Genome accession   NZ_CP138967
Coordinates   1614240..1615373 (+) Length   377 a.a.
NCBI ID   WP_036904541.1    Uniprot ID   A0A0A2C8Z1
Organism   Prochlorococcus marinus str. PAC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1609240..1620373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB93_RS09545 - 1609616..1609927 (-) 312 WP_011295471.1 50S ribosomal protein L23 -
  SIB93_RS09550 rplD 1609920..1610555 (-) 636 WP_036904550.1 50S ribosomal protein L4 -
  SIB93_RS09555 rplC 1610555..1611211 (-) 657 WP_036904549.1 50S ribosomal protein L3 -
  SIB93_RS09560 - 1611582..1612046 (+) 465 WP_036904547.1 NAD(P)H-quinone oxidoreductase subunit N -
  SIB93_RS09565 - 1612058..1613080 (+) 1023 WP_036904545.1 LdpA C-terminal domain-containing domain -
  SIB93_RS09575 - 1613348..1614127 (+) 780 WP_036904543.1 HAD family hydrolase -
  SIB93_RS09580 recA 1614240..1615373 (+) 1134 WP_036904541.1 recombinase RecA Machinery gene
  SIB93_RS09585 - 1615397..1615636 (-) 240 WP_036904539.1 DUF2839 domain-containing protein -
  SIB93_RS09590 - 1615674..1617122 (-) 1449 WP_036904537.1 helicase -
  SIB93_RS09595 - 1617196..1618071 (+) 876 WP_036904535.1 prephenate/arogenate dehydrogenase -
  SIB93_RS09600 crtD 1618064..1619581 (-) 1518 WP_036904534.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40394.00 Da        Isoelectric Point: 7.2479

>NTDB_id=906334 SIB93_RS09580 WP_036904541.1 1614240..1615373(+) (recA) [Prochlorococcus marinus str. PAC1]
MSNEGKPLQSTESKKIDAKSGEKEKALSLVVGQIERNFGKGSIMRLGDASKMRVETISTGALTLDLALGGGYPKGRVIEV
YGPESSGKTTLTLHAIAEIQRNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSAAVDLVVVD
SVAALTPRSEIEGEMGDHSVGAQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVRLD
IRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTLGCLLDLADETNVVTRKGAWYSYEGDNIGQGRDN
TITWLEQNPESKEIIEKLVKEKLTEGSEVSANSMRPLASAARQASSRPNLSQVSANG

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=906334 SIB93_RS09580 WP_036904541.1 1614240..1615373(+) (recA) [Prochlorococcus marinus str. PAC1]
ATGTCAAACGAAGGTAAGCCACTCCAATCCACTGAATCTAAGAAAATAGACGCAAAATCTGGAGAGAAAGAAAAAGCATT
GAGCTTAGTTGTTGGGCAAATAGAGCGCAATTTCGGAAAGGGTTCGATCATGCGTCTTGGCGACGCGTCAAAGATGCGGG
TAGAGACAATATCTACGGGTGCTTTAACTCTTGATTTAGCTCTTGGTGGAGGCTATCCCAAAGGACGTGTAATTGAAGTT
TATGGTCCCGAAAGTTCTGGAAAAACAACGCTGACATTACATGCAATAGCAGAAATTCAACGTAACGGCGGAGTTGCTGC
TTTTGTAGATGCAGAACATGCTCTTGACCCAGTCTATGCAGCTTCGCTTGGTGTTGATGTAGAAAATCTTCTCGTATCTC
AACCGGATACAGGTGAGATGGCATTGGAAATCGTTGACCAACTTATTAGATCTGCTGCAGTCGATCTAGTAGTTGTTGAT
TCAGTCGCTGCACTGACGCCCCGTTCAGAGATAGAAGGAGAAATGGGTGATCATTCAGTAGGTGCTCAAGCTCGTCTAAT
GAGTCAAGCAATGAGAAAAATTACTGGAAATATTGGAAAGTCTGGTTGCACAGTAATTTTCTTAAATCAATTACGTCTAA
AAATTGGTATTACATATGGGAATCCAGAAACAACAACTGGTGGAAACGCTCTTAAATTTTATGCCTCTGTAAGATTAGAT
ATTCGTCGTATCCAAACGTTAAAGAGAGGAACTGAAGAATATGGAATTCGTGCAAAAGTGAAAGTCGCAAAAAACAAAGT
TGCGCCTCCATTTCGAATAGCCGAATTTGATATTCTTTTTGGGAAAGGAATTAGTACTCTTGGTTGTCTTCTTGATTTAG
CAGATGAGACTAATGTCGTTACTCGTAAAGGAGCTTGGTATAGCTATGAAGGTGACAATATTGGGCAAGGGAGAGACAAC
ACCATTACTTGGCTTGAACAAAATCCTGAATCAAAAGAAATAATTGAAAAGTTAGTTAAAGAAAAGTTAACTGAGGGCTC
AGAAGTAAGTGCTAATTCAATGAGACCATTGGCGTCAGCGGCTCGACAAGCTTCTTCACGACCAAACCTAAGCCAAGTTT
CAGCGAACGGTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A2C8Z1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.048

87.798

0.562
  recA Ralstonia pseudosolanacearum GMI1000

62.462

88.329

0.552
  recA Acinetobacter baumannii D1279779

64.286

85.411

0.549
  recA Neisseria gonorrhoeae MS11

59.71

91.512

0.546
  recA Neisseria gonorrhoeae MS11

59.71

91.512

0.546
  recA Neisseria gonorrhoeae strain FA1090

59.71

91.512

0.546
  recA Pseudomonas stutzeri DSM 10701

63.043

85.411

0.538
  recA Helicobacter pylori strain NCTC11637

59.763

89.655

0.536
  recA Helicobacter pylori 26695

59.763

89.655

0.536
  recA Streptococcus pneumoniae Rx1

55.866

94.96

0.531
  recA Streptococcus pneumoniae D39

55.866

94.96

0.531
  recA Streptococcus pneumoniae R6

55.866

94.96

0.531
  recA Streptococcus pneumoniae TIGR4

55.866

94.96

0.531
  recA Vibrio cholerae strain A1552

61.801

85.411

0.528
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.801

85.411

0.528
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.459

88.329

0.525
  recA Streptococcus mitis NCTC 12261

55.241

93.634

0.517
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.359

87.268

0.509
  recA Glaesserella parasuis strain SC1401

59.443

85.676

0.509
  recA Bacillus subtilis subsp. subtilis str. 168

59.502

85.146

0.507
  recA Streptococcus mitis SK321

57.402

87.798

0.504
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.193

89.39

0.493
  recA Streptococcus mutans UA159

56.615

86.207

0.488
  recA Lactococcus lactis subsp. cremoris KW2

54.167

89.125

0.483
  recA Streptococcus pyogenes NZ131

55.046

86.737

0.477
  recA Latilactobacillus sakei subsp. sakei 23K

58.689

80.902

0.475