Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   SIB79_RS11870 Genome accession   NZ_CP138957
Coordinates   2334378..2336294 (-) Length   638 a.a.
NCBI ID   WP_063404339.1    Uniprot ID   -
Organism   Prochlorococcus sp. MIT 1342     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2329378..2341294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB79_RS11850 msrB 2330264..2330770 (+) 507 WP_063405306.1 peptide-methionine (R)-S-oxide reductase MsrB -
  SIB79_RS11855 - 2330697..2332019 (+) 1323 WP_063404342.1 NAD(P)/FAD-dependent oxidoreductase -
  SIB79_RS11860 - 2331994..2333274 (-) 1281 WP_063404340.1 type II secretion system F family protein -
  SIB79_RS11865 pilT 2333291..2334367 (-) 1077 WP_011129398.1 type IV pilus twitching motility protein PilT Machinery gene
  SIB79_RS11870 pilB/pilB1 2334378..2336294 (-) 1917 WP_063404339.1 GspE/PulE family protein Machinery gene
  SIB79_RS11875 grpE 2336293..2337006 (+) 714 WP_063404337.1 nucleotide exchange factor GrpE -
  SIB79_RS11880 dnaJ 2337051..2338187 (+) 1137 WP_063404335.1 molecular chaperone DnaJ -
  SIB79_RS11885 - 2338184..2338429 (+) 246 WP_063404332.1 sulfurtransferase TusA family protein -
  SIB79_RS11890 rsgA 2338416..2339381 (+) 966 WP_063404330.1 ribosome small subunit-dependent GTPase A -
  SIB79_RS11895 - 2339338..2339679 (-) 342 WP_011824714.1 YbaB/EbfC family nucleoid-associated protein -
  SIB79_RS11900 murB 2339704..2340627 (-) 924 WP_063404328.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 638 a.a.        Molecular weight: 70433.36 Da        Isoelectric Point: 6.4567

>NTDB_id=906240 SIB79_RS11870 WP_063404339.1 2334378..2336294(-) (pilB/pilB1) [Prochlorococcus sp. MIT 1342]
MLTVCKFTSRHVDGNSTPPTSGGSPHLQFHFFFVTQGRPIPKATNSIQQRLELELLLQVNVLSHEELVVGVELMANHTTL
DISTWQQFQALPINMHNQHLVLAISDQCNEQTKNQLISVLQSQGFSTEFRLALAADISQLLAPMRSEQHVESASKSKTTK
PIAQTPTSLLAGFSAEGVLEEDPEEQARLASSVEDLESSLMDSDSSPVINLVDRILLEALQTEASDVHVEPQQDGLQIRF
RQDGVLQRYIEPLPSRLIPAVTSRFKIMADLDIAERRMAQDGRIRRTYRNRMVDFRVNSLPSRYGEKICLRLLDSSAPQL
GLDKLISNPSALSLVRNLGSKPFGMILVTGPTGSGKSTTLYSLLAERNEPGINISTVEDPIEYTLPGITQCQVNREKGFD
FSTALRAFMRQDPDVLLVGETRDLETAKTAIEAALTGHLVLTTLHCNDASSAIARLNEMGVEPFMVSASLIGIVSQRLLR
RVCRSCRKSYHPTEKELGRFGLMAHTETGVTFFKAHHHGQEKQPCPNCQGSGYKGRVGVYEVLRMNEELASAVAKGATTD
LVRRLALEAGMKTLLGYSLDLVREGHTTLEEVGRMILTDSGLESERRARALSTLTCNVCGAGLQDGWLECPYCLTARQ

Nucleotide


Download         Length: 1917 bp        

>NTDB_id=906240 SIB79_RS11870 WP_063404339.1 2334378..2336294(-) (pilB/pilB1) [Prochlorococcus sp. MIT 1342]
ATGCTGACCGTTTGCAAATTCACGTCTAGACATGTTGATGGGAATAGCACACCTCCCACAAGCGGCGGAAGCCCGCACCT
CCAATTTCATTTCTTCTTCGTGACCCAGGGCCGACCAATCCCCAAAGCAACCAACAGCATCCAGCAGCGACTGGAACTGG
AACTGCTCCTACAAGTCAATGTGCTTAGCCACGAAGAACTTGTTGTCGGAGTGGAGCTAATGGCCAACCACACCACTCTT
GACATCTCAACGTGGCAACAATTCCAGGCCCTGCCAATCAACATGCACAACCAACATTTGGTTTTAGCCATCTCGGACCA
ATGCAATGAGCAAACCAAAAATCAACTGATCTCAGTGCTGCAGTCCCAAGGCTTCAGCACAGAATTCCGTCTCGCGCTTG
CAGCCGACATCAGCCAGCTGCTTGCACCAATGAGATCTGAGCAGCACGTTGAATCTGCATCCAAGTCAAAAACAACAAAG
CCAATTGCACAAACACCAACCTCCCTGCTGGCAGGATTTAGTGCCGAAGGCGTGCTCGAAGAAGATCCTGAAGAACAAGC
CAGACTTGCTAGTTCCGTAGAGGATTTGGAGTCCAGCTTGATGGACTCAGACAGTTCACCAGTCATCAACCTGGTGGACC
GCATATTGCTAGAGGCACTGCAAACAGAAGCCAGCGATGTACACGTTGAGCCGCAACAAGACGGACTACAGATCCGCTTC
CGTCAAGACGGTGTCCTGCAACGCTATATCGAACCCCTCCCGAGCCGATTGATCCCTGCTGTTACCTCACGCTTCAAGAT
CATGGCCGACCTAGACATCGCAGAACGGCGCATGGCTCAGGACGGTCGCATTCGTCGCACATATCGCAATCGTATGGTCG
ATTTCAGGGTTAATAGCCTGCCAAGCCGTTACGGGGAAAAAATCTGTCTGCGACTCCTCGACAGCAGTGCTCCACAACTC
GGGTTAGACAAACTGATCAGCAACCCAAGTGCTCTCTCTCTCGTACGCAACTTGGGCTCTAAGCCCTTCGGCATGATCCT
TGTGACAGGTCCAACAGGGTCAGGCAAGTCAACAACCCTTTACTCCCTCCTGGCAGAACGCAACGAGCCTGGTATCAACA
TTTCCACCGTAGAAGATCCCATCGAATACACCCTCCCTGGGATTACCCAATGTCAAGTGAATAGGGAAAAAGGCTTCGAT
TTCAGTACTGCACTGAGAGCCTTCATGCGTCAAGACCCAGACGTTCTGCTGGTCGGTGAAACCCGTGACCTAGAAACCGC
AAAAACCGCCATCGAAGCCGCACTGACTGGTCATCTGGTACTAACCACACTGCATTGCAATGACGCATCAAGTGCGATCG
CCCGCCTCAACGAGATGGGCGTGGAACCATTCATGGTGAGCGCCTCGTTGATTGGCATCGTCTCTCAACGACTTCTACGA
AGAGTGTGCCGTTCTTGTCGTAAGTCATATCACCCAACTGAAAAAGAGCTGGGGCGATTCGGCTTGATGGCCCATACAGA
AACTGGGGTGACCTTTTTCAAGGCCCACCATCACGGTCAAGAAAAACAGCCGTGCCCCAACTGTCAAGGCAGCGGCTACA
AGGGCCGAGTTGGTGTCTATGAAGTACTACGCATGAACGAAGAGCTCGCTTCAGCCGTCGCCAAAGGTGCCACTACTGAT
TTAGTAAGACGTCTGGCGCTCGAGGCTGGTATGAAAACTCTATTGGGCTACAGCCTTGACCTGGTGCGAGAAGGCCACAC
CACCCTTGAGGAAGTAGGCCGAATGATCCTCACCGATTCCGGATTGGAATCAGAGCGCCGCGCCAGAGCCCTTAGCACTC
TTACCTGCAACGTCTGCGGGGCAGGCCTCCAAGACGGCTGGCTGGAATGTCCCTACTGTCTAACCGCTCGCCAATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(215-481)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(48-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

53.477

94.671

0.506